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Cluster: Rep_169_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_169_c_85 Rep_169_c_85_4 4109 6445 + GH88 | PL38
CAZyme Rep_169_c_85 Rep_169_c_85_5 6467 8908 + GH2
TC Rep_169_c_85 Rep_169_c_85_6 9322 12477 + 1.B.14.6.1
TC Rep_169_c_85 Rep_169_c_85_7 12591 14090 + 8.A.46.1.5
pfam Rep_169_c_85 Rep_169_c_85_8 14143 15813 + TIG | TIG
CAZyme Rep_169_c_85 Rep_169_c_85_9 15819 17990 + PL6 | PL6_1
CAZyme Rep_169_c_85 Rep_169_c_85_10 18314 20536 + PL17 | PL17_2
pfam Rep_169_c_85 Rep_169_c_85_11 20822 21166 + Cupin_2 | Cupin_7
TC Rep_169_c_85 Rep_169_c_85_12 21193 22662 + 2.A.1.14.25
Gene ID: Rep_169_c_85_4
Type: CAZyme
Location: 4109 - 6445 (+)
Gene ID: Rep_169_c_85_5
Type: CAZyme
Location: 6467 - 8908 (+)
Gene ID: Rep_169_c_85_6
Type: TC
Location: 9322 - 12477 (+)
Gene ID: Rep_169_c_85_7
Type: TC
Location: 12591 - 14090 (+)
Gene ID: Rep_169_c_85_8
Type: pfam
Location: 14143 - 15813 (+)
Gene ID: Rep_169_c_85_9
Type: CAZyme
Location: 15819 - 17990 (+)
Gene ID: Rep_169_c_85_10
Type: CAZyme
Location: 18314 - 20536 (+)
Gene ID: Rep_169_c_85_11
Type: pfam
Location: 20822 - 21166 (+)
Gene ID: Rep_169_c_85_12
Type: TC
Location: 21193 - 22662 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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