dbCAN Logo

Cluster: Rep_1692_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1692_c_0 Rep_1692_c_0_1519 1645140 1646243 - 3.A.1.1.26
NULL(UNKNOWN) Rep_1692_c_0 Rep_1692_c_0_1520 1646280 1648649 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1692_c_0 Rep_1692_c_0_1521 1648672 1651032 - GxGYxYP_C | GxGYxYP_N | GxGYxYP_N_3rd
TC Rep_1692_c_0 Rep_1692_c_0_1522 1651046 1651927 - 3.A.1.1.39
TC Rep_1692_c_0 Rep_1692_c_0_1523 1651930 1652844 - 3.A.1.1.11
TC Rep_1692_c_0 Rep_1692_c_0_1524 1652856 1654187 - 3.A.1.1.16
TF Rep_1692_c_0 Rep_1692_c_0_1525 1654294 1655304 - LacI
NULL(UNKNOWN) Rep_1692_c_0 Rep_1692_c_0_1526 1655288 1656163 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1692_c_0 Rep_1692_c_0_1527 1656393 1659320 + GH38
Gene ID: Rep_1692_c_0_1519
Type: TC
Location: 1645140 - 1646243 (-)
Gene ID: Rep_1692_c_0_1520
Type:
Location: 1646280 - 1648649 (-)
Gene ID: Rep_1692_c_0_1521
Type: pfam
Location: 1648672 - 1651032 (-)
Gene ID: Rep_1692_c_0_1522
Type: TC
Location: 1651046 - 1651927 (-)
Gene ID: Rep_1692_c_0_1523
Type: TC
Location: 1651930 - 1652844 (-)
Gene ID: Rep_1692_c_0_1524
Type: TC
Location: 1652856 - 1654187 (-)
Gene ID: Rep_1692_c_0_1525
Type: TF
Location: 1654294 - 1655304 (-)
Gene ID: Rep_1692_c_0_1526
Type:
Location: 1655288 - 1656163 (-)
Gene ID: Rep_1692_c_0_1527
Type: CAZyme
Location: 1656393 - 1659320 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RFN20
→
Family
CAG-288
→
Genus
CAG-288
→
Species
CAG-288 sp000437395

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List