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Cluster: Rep_168_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_168_c_165 Rep_168_c_165_29 30584 31522 + 9.B.104.1.2
pfam Rep_168_c_165 Rep_168_c_165_30 31519 32619 + Exo_endo_phos
TC Rep_168_c_165 Rep_168_c_165_31 32744 35761 + 2.A.6.4.3
pfam Rep_168_c_165 Rep_168_c_165_32 36126 36725 + AAA_14
pfam Rep_168_c_165 Rep_168_c_165_33 36725 37267 + DUF4143
CAZyme Rep_168_c_165 Rep_168_c_165_34 37611 38651 - GH43_1
TC Rep_168_c_165 Rep_168_c_165_35 38670 40079 - 2.A.2.3.2
CAZyme Rep_168_c_165 Rep_168_c_165_36 40298 42289 + GH67
TF Rep_168_c_165 Rep_168_c_165_37 42565 45546 + HTH_AraC | HTH_AraC
TC Rep_168_c_165 Rep_168_c_165_38 45672 48884 + 1.B.14.6.1
Gene ID: Rep_168_c_165_29
Type: TC
Location: 30584 - 31522 (+)
Gene ID: Rep_168_c_165_30
Type: pfam
Location: 31519 - 32619 (+)
Gene ID: Rep_168_c_165_31
Type: TC
Location: 32744 - 35761 (+)
Gene ID: Rep_168_c_165_32
Type: pfam
Location: 36126 - 36725 (+)
Gene ID: Rep_168_c_165_33
Type: pfam
Location: 36725 - 37267 (+)
Gene ID: Rep_168_c_165_34
Type: CAZyme
Location: 37611 - 38651 (-)
Gene ID: Rep_168_c_165_35
Type: TC
Location: 38670 - 40079 (-)
Gene ID: Rep_168_c_165_36
Type: CAZyme
Location: 40298 - 42289 (+)
Gene ID: Rep_168_c_165_37
Type: TF
Location: 42565 - 45546 (+)
Gene ID: Rep_168_c_165_38
Type: TC
Location: 45672 - 48884 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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