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Cluster: Rep_1689_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1689_c_0 Rep_1689_c_0_361 450525 453107 - PL1
NULL(UNKNOWN) Rep_1689_c_0 Rep_1689_c_0_362 453311 454669 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1689_c_0 Rep_1689_c_0_363 455029 456543 - 8.A.7.1.1
pfam Rep_1689_c_0 Rep_1689_c_0_364 456649 457479 - PHP
pfam Rep_1689_c_0 Rep_1689_c_0_365 457557 458414 - VCA0040-like
CAZyme Rep_1689_c_0 Rep_1689_c_0_366 458525 462103 - PL9_1
pfam Rep_1689_c_0 Rep_1689_c_0_367 462115 463467 - Big_3 | Big_3
pfam Rep_1689_c_0 Rep_1689_c_0_368 463540 465816 - Big_3 | Big_3
TC Rep_1689_c_0 Rep_1689_c_0_369 466002 468668 - 3.A.1.122.2
Gene ID: Rep_1689_c_0_361
Type: CAZyme
Location: 450525 - 453107 (-)
Gene ID: Rep_1689_c_0_362
Type:
Location: 453311 - 454669 (+)
Gene ID: Rep_1689_c_0_363
Type: TC
Location: 455029 - 456543 (-)
Gene ID: Rep_1689_c_0_364
Type: pfam
Location: 456649 - 457479 (-)
Gene ID: Rep_1689_c_0_365
Type: pfam
Location: 457557 - 458414 (-)
Gene ID: Rep_1689_c_0_366
Type: CAZyme
Location: 458525 - 462103 (-)
Gene ID: Rep_1689_c_0_367
Type: pfam
Location: 462115 - 463467 (-)
Gene ID: Rep_1689_c_0_368
Type: pfam
Location: 463540 - 465816 (-)
Gene ID: Rep_1689_c_0_369
Type: TC
Location: 466002 - 468668 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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