Cluster: Rep_167_CGC18
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 8
- Substrate:
- Genome ID: Rep_167
- CGC Family ID: CGCFAM_09449
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_167_c_73 | Rep_167_c_73_6 | 10527 | 13700 | - | 1.B.14.6.1 |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_7 | 13912 | 15513 | - | CBM91 | GH43_10 |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_8 | 15969 | 17219 | - | CE1 |
| TC | Rep_167_c_73 | Rep_167_c_73_9 | 17434 | 18609 | + | 2.A.1.2.18 |
| STP | Rep_167_c_73 | Rep_167_c_73_10 | 18963 | 20153 | + | AAA |
| NULL(UNKNOWN) | Rep_167_c_73 | Rep_167_c_73_11 | 20278 | 21414 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_12 | 21617 | 22906 | + | PL42 |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_13 | 22990 | 24264 | + | GH154 |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_14 | 24308 | 28576 | + | GH105 | GH2 |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_15 | 28674 | 31106 | - | GH115 |
| TC | Rep_167_c_73 | Rep_167_c_73_16 | 31266 | 33065 | - | 8.A.46.1.6 |
| TC | Rep_167_c_73 | Rep_167_c_73_17 | 33122 | 36154 | - | 1.B.14.6.1 |
| TF | Rep_167_c_73 | Rep_167_c_73_18 | 36369 | 40247 | - | HTH_AraC |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_19 | 40333 | 42135 | + | CBM91 | GH43_10 |
| CAZyme | Rep_167_c_73 | Rep_167_c_73_20 | 42175 | 44574 | + | GH146 |
Gene ID: Rep_167_c_73_6
Type: TC
Location: 10527 - 13700 (-)
Type: TC
Location: 10527 - 13700 (-)
Gene ID: Rep_167_c_73_7
Type: CAZyme
Location: 13912 - 15513 (-)
Type: CAZyme
Location: 13912 - 15513 (-)
Gene ID: Rep_167_c_73_8
Type: CAZyme
Location: 15969 - 17219 (-)
Type: CAZyme
Location: 15969 - 17219 (-)
Gene ID: Rep_167_c_73_9
Type: TC
Location: 17434 - 18609 (+)
Type: TC
Location: 17434 - 18609 (+)
Gene ID: Rep_167_c_73_10
Type: STP
Location: 18963 - 20153 (+)
Type: STP
Location: 18963 - 20153 (+)
Gene ID: Rep_167_c_73_11
Type:
Location: 20278 - 21414 (+)
Type:
Location: 20278 - 21414 (+)
Gene ID: Rep_167_c_73_12
Type: CAZyme
Location: 21617 - 22906 (+)
Type: CAZyme
Location: 21617 - 22906 (+)
Gene ID: Rep_167_c_73_13
Type: CAZyme
Location: 22990 - 24264 (+)
Type: CAZyme
Location: 22990 - 24264 (+)
Gene ID: Rep_167_c_73_14
Type: CAZyme
Location: 24308 - 28576 (+)
Type: CAZyme
Location: 24308 - 28576 (+)
Gene ID: Rep_167_c_73_15
Type: CAZyme
Location: 28674 - 31106 (-)
Type: CAZyme
Location: 28674 - 31106 (-)
Gene ID: Rep_167_c_73_16
Type: TC
Location: 31266 - 33065 (-)
Type: TC
Location: 31266 - 33065 (-)
Gene ID: Rep_167_c_73_17
Type: TC
Location: 33122 - 36154 (-)
Type: TC
Location: 33122 - 36154 (-)
Gene ID: Rep_167_c_73_18
Type: TF
Location: 36369 - 40247 (-)
Type: TF
Location: 36369 - 40247 (-)
Gene ID: Rep_167_c_73_19
Type: CAZyme
Location: 40333 - 42135 (+)
Type: CAZyme
Location: 40333 - 42135 (+)
Gene ID: Rep_167_c_73_20
Type: CAZyme
Location: 42175 - 44574 (+)
Type: CAZyme
Location: 42175 - 44574 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_167_c_73_14 | vegetarian > omnivore | 1.14401 | 0.01557 |