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Cluster: Rep_167_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_167_c_62 Rep_167_c_62_9 13175 14284 - GH53
pfam Rep_167_c_62 Rep_167_c_62_10 14472 15920 - SusF_N
pfam Rep_167_c_62 Rep_167_c_62_11 15941 17104 - SusE | SusF_SusE
TC Rep_167_c_62 Rep_167_c_62_12 17139 18839 - 8.A.46.1.1
TC Rep_167_c_62 Rep_167_c_62_13 18853 21861 - 1.B.14.6.1
TF Rep_167_c_62 Rep_167_c_62_14 22088 23125 + LacI
TC Rep_167_c_62 Rep_167_c_62_15 23146 24489 + 2.A.2.6.3
CAZyme Rep_167_c_62 Rep_167_c_62_16 24507 27251 + GH77
CAZyme Rep_167_c_62 Rep_167_c_62_17 27346 29475 + GH97
CAZyme Rep_167_c_62 Rep_167_c_62_18 29777 31684 + GH13_14
Gene ID: Rep_167_c_62_9
Type: CAZyme
Location: 13175 - 14284 (-)
Gene ID: Rep_167_c_62_10
Type: pfam
Location: 14472 - 15920 (-)
Gene ID: Rep_167_c_62_11
Type: pfam
Location: 15941 - 17104 (-)
Gene ID: Rep_167_c_62_12
Type: TC
Location: 17139 - 18839 (-)
Gene ID: Rep_167_c_62_13
Type: TC
Location: 18853 - 21861 (-)
Gene ID: Rep_167_c_62_14
Type: TF
Location: 22088 - 23125 (+)
Gene ID: Rep_167_c_62_15
Type: TC
Location: 23146 - 24489 (+)
Gene ID: Rep_167_c_62_16
Type: CAZyme
Location: 24507 - 27251 (+)
Gene ID: Rep_167_c_62_17
Type: CAZyme
Location: 27346 - 29475 (+)
Gene ID: Rep_167_c_62_18
Type: CAZyme
Location: 29777 - 31684 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Prevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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