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Cluster: Rep_1676_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1676_c_0 Rep_1676_c_0_11 15102 17006 - 3.A.1.135.5
TC Rep_1676_c_0 Rep_1676_c_0_12 16999 18792 - 3.A.1.135.5
TF Rep_1676_c_0 Rep_1676_c_0_13 18792 19238 - MarR
TF Rep_1676_c_0 Rep_1676_c_0_14 19352 20224 - HTH_1
TC Rep_1676_c_0 Rep_1676_c_0_15 20340 21962 + 2.A.58.2.2
TC Rep_1676_c_0 Rep_1676_c_0_16 22000 23205 - 3.A.1.11.7
TC Rep_1676_c_0 Rep_1676_c_0_17 23205 24086 - 3.A.1.11.8
TC Rep_1676_c_0 Rep_1676_c_0_18 24086 24919 - 3.A.1.11.2
TC Rep_1676_c_0 Rep_1676_c_0_19 24909 26057 - 3.A.1.11.8
NULL(UNKNOWN) Rep_1676_c_0 Rep_1676_c_0_20 26262 26693 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_1676_c_0 Rep_1676_c_0_21 26698 27369 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1676_c_0 Rep_1676_c_0_22 27406 28002 - GH3
NULL(UNKNOWN) Rep_1676_c_0 Rep_1676_c_0_23 28029 28223 - NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_1676_c_0 Rep_1676_c_0_24 28204 28740 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1676_c_0 Rep_1676_c_0_25 28747 30120 - 2.A.26.1.3
Gene ID: Rep_1676_c_0_11
Type: TC
Location: 15102 - 17006 (-)
Gene ID: Rep_1676_c_0_12
Type: TC
Location: 16999 - 18792 (-)
Gene ID: Rep_1676_c_0_13
Type: TF
Location: 18792 - 19238 (-)
Gene ID: Rep_1676_c_0_14
Type: TF
Location: 19352 - 20224 (-)
Gene ID: Rep_1676_c_0_15
Type: TC
Location: 20340 - 21962 (+)
Gene ID: Rep_1676_c_0_16
Type: TC
Location: 22000 - 23205 (-)
Gene ID: Rep_1676_c_0_17
Type: TC
Location: 23205 - 24086 (-)
Gene ID: Rep_1676_c_0_18
Type: TC
Location: 24086 - 24919 (-)
Gene ID: Rep_1676_c_0_19
Type: TC
Location: 24909 - 26057 (-)
Gene ID: Rep_1676_c_0_20
Type:
Location: 26262 - 26693 (-)
Gene ID: Rep_1676_c_0_21
Type:
Location: 26698 - 27369 (-)
Gene ID: Rep_1676_c_0_22
Type: CAZyme
Location: 27406 - 28002 (-)
Gene ID: Rep_1676_c_0_23
Type:
Location: 28029 - 28223 (-)
Gene ID: Rep_1676_c_0_24
Type:
Location: 28204 - 28740 (-)
Gene ID: Rep_1676_c_0_25
Type: TC
Location: 28747 - 30120 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
ML615J-28
→
Family
CAG-313
→
Genus
CAG-313
→
Species
CAG-313 sp003539625

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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