Cluster: Rep_164_CGC11
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_164
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_164_c_146 | Rep_164_c_146_9 | 8952 | 9686 | - | GH26 |
| CAZyme | Rep_164_c_146 | Rep_164_c_146_10 | 9742 | 11214 | - | GH106 |
| TF | Rep_164_c_146 | Rep_164_c_146_11 | 11274 | 12134 | - | AraC_N | HTH_AraC |
| pfam | Rep_164_c_146 | Rep_164_c_146_12 | 12255 | 12635 | - | DUF4878 | Lumazine_bd_2 |
| CAZyme | Rep_164_c_146 | Rep_164_c_146_13 | 13039 | 15609 | + | GH115 |
| NULL(UNKNOWN) | Rep_164_c_146 | Rep_164_c_146_14 | 15531 | 15692 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_164_c_146 | Rep_164_c_146_15 | 15708 | 17390 | + | CBM91 | GH43_10 |
| CAZyme | Rep_164_c_146 | Rep_164_c_146_16 | 17427 | 19415 | + | GH43_35 |
| pfam | Rep_164_c_146 | Rep_164_c_146_17 | 19574 | 20527 | - | CTP_transf_like | Flavokinase | FAD_syn |
| pfam | Rep_164_c_146 | Rep_164_c_146_18 | 20795 | 22144 | - | DUF4842 |
| TC | Rep_164_c_146 | Rep_164_c_146_19 | 22303 | 23535 | + | 9.B.156.3.1 |
Gene ID: Rep_164_c_146_9
Type: CAZyme
Location: 8952 - 9686 (-)
Type: CAZyme
Location: 8952 - 9686 (-)
Gene ID: Rep_164_c_146_10
Type: CAZyme
Location: 9742 - 11214 (-)
Type: CAZyme
Location: 9742 - 11214 (-)
Gene ID: Rep_164_c_146_11
Type: TF
Location: 11274 - 12134 (-)
Type: TF
Location: 11274 - 12134 (-)
Gene ID: Rep_164_c_146_12
Type: pfam
Location: 12255 - 12635 (-)
Type: pfam
Location: 12255 - 12635 (-)
Gene ID: Rep_164_c_146_13
Type: CAZyme
Location: 13039 - 15609 (+)
Type: CAZyme
Location: 13039 - 15609 (+)
Gene ID: Rep_164_c_146_14
Type:
Location: 15531 - 15692 (-)
Type:
Location: 15531 - 15692 (-)
Gene ID: Rep_164_c_146_15
Type: CAZyme
Location: 15708 - 17390 (+)
Type: CAZyme
Location: 15708 - 17390 (+)
Gene ID: Rep_164_c_146_16
Type: CAZyme
Location: 17427 - 19415 (+)
Type: CAZyme
Location: 17427 - 19415 (+)
Gene ID: Rep_164_c_146_17
Type: pfam
Location: 19574 - 20527 (-)
Type: pfam
Location: 19574 - 20527 (-)
Gene ID: Rep_164_c_146_18
Type: pfam
Location: 20795 - 22144 (-)
Type: pfam
Location: 20795 - 22144 (-)
Gene ID: Rep_164_c_146_19
Type: TC
Location: 22303 - 23535 (+)
Type: TC
Location: 22303 - 23535 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.