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Cluster: Rep_1635_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1635_c_5 Rep_1635_c_5_30 23959 24873 + 3.A.1.124.3
pfam Rep_1635_c_5 Rep_1635_c_5_31 24851 26242 + ABC2_membrane_2 | ABC2_membrane_3 | ABC2_membrane_4
CAZyme Rep_1635_c_5 Rep_1635_c_5_32 26276 27472 + CE4
NULL(UNKNOWN) Rep_1635_c_5 Rep_1635_c_5_33 27473 27847 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1635_c_5 Rep_1635_c_5_34 27899 29626 - 3.A.1.106.2
TF Rep_1635_c_5 Rep_1635_c_5_35 29808 30809 + HTH_11
pfam Rep_1635_c_5 Rep_1635_c_5_36 30810 31379 + GrpE
TC Rep_1635_c_5 Rep_1635_c_5_37 31462 33291 + 1.A.33.1.4
Gene ID: Rep_1635_c_5_30
Type: TC
Location: 23959 - 24873 (+)
Gene ID: Rep_1635_c_5_31
Type: pfam
Location: 24851 - 26242 (+)
Gene ID: Rep_1635_c_5_32
Type: CAZyme
Location: 26276 - 27472 (+)
Gene ID: Rep_1635_c_5_33
Type:
Location: 27473 - 27847 (-)
Gene ID: Rep_1635_c_5_34
Type: TC
Location: 27899 - 29626 (-)
Gene ID: Rep_1635_c_5_35
Type: TF
Location: 29808 - 30809 (+)
Gene ID: Rep_1635_c_5_36
Type: pfam
Location: 30810 - 31379 (+)
Gene ID: Rep_1635_c_5_37
Type: TC
Location: 31462 - 33291 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RF39
→
Family
UBA660
→
Genus
Caccenecus
→
Species
Caccenecus sp900549285

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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