Cluster: Rep_162_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: Rep_162
- CGC Family ID: CGCFAM_00001
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_162_c_1 | Rep_162_c_1_68 | 89286 | 91556 | + | 3.A.11.3.1 |
| CAZyme | Rep_162_c_1 | Rep_162_c_1_69 | 91647 | 93692 | - | GH97 |
| CAZyme | Rep_162_c_1 | Rep_162_c_1_70 | 93719 | 94951 | - | GH99 |
| pfam | Rep_162_c_1 | Rep_162_c_1_71 | 95095 | 96687 | - | SusD_RagB | SusD-like_3 |
| TC | Rep_162_c_1 | Rep_162_c_1_72 | 96736 | 99678 | - | 1.B.14.6.1 |
Gene ID: Rep_162_c_1_68
Type: TC
Location: 89286 - 91556 (+)
Type: TC
Location: 89286 - 91556 (+)
Gene ID: Rep_162_c_1_69
Type: CAZyme
Location: 91647 - 93692 (-)
Type: CAZyme
Location: 91647 - 93692 (-)
Gene ID: Rep_162_c_1_70
Type: CAZyme
Location: 93719 - 94951 (-)
Type: CAZyme
Location: 93719 - 94951 (-)
Gene ID: Rep_162_c_1_71
Type: pfam
Location: 95095 - 96687 (-)
Type: pfam
Location: 95095 - 96687 (-)
Gene ID: Rep_162_c_1_72
Type: TC
Location: 96736 - 99678 (-)
Type: TC
Location: 96736 - 99678 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900547005
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.