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Cluster: Rep_162_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_162_c_28 Rep_162_c_28_7 8228 11605 + 3.A.5.1.1
TC Rep_162_c_28 Rep_162_c_28_8 11607 12431 + 3.A.1.128.6
pfam Rep_162_c_28 Rep_162_c_28_9 12958 15546 + MutS_V | Smr | MSSS
pfam Rep_162_c_28 Rep_162_c_28_10 15726 16349 - DUF3256
TC Rep_162_c_28 Rep_162_c_28_11 16533 19271 - 4.A.2.1.17
NULL(UNKNOWN) Rep_162_c_28 Rep_162_c_28_12 19771 19941 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_162_c_28 Rep_162_c_28_13 20171 20386 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_162_c_28 Rep_162_c_28_14 20411 23572 - GH13_42
Gene ID: Rep_162_c_28_7
Type: TC
Location: 8228 - 11605 (+)
Gene ID: Rep_162_c_28_8
Type: TC
Location: 11607 - 12431 (+)
Gene ID: Rep_162_c_28_9
Type: pfam
Location: 12958 - 15546 (+)
Gene ID: Rep_162_c_28_10
Type: pfam
Location: 15726 - 16349 (-)
Gene ID: Rep_162_c_28_11
Type: TC
Location: 16533 - 19271 (-)
Gene ID: Rep_162_c_28_12
Type:
Location: 19771 - 19941 (+)
Gene ID: Rep_162_c_28_13
Type:
Location: 20171 - 20386 (-)
Gene ID: Rep_162_c_28_14
Type: CAZyme
Location: 20411 - 23572 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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