Cluster: Rep_1612_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_1612
- CGC Family ID: CGCFAM_00003
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1612_c_14 | Rep_1612_c_14_9 | 9912 | 10874 | - | 3.A.5.1.1 |
| pfam | Rep_1612_c_14 | Rep_1612_c_14_10 | 10963 | 11964 | - | adh_short | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | NAD_binding_4 | GDP_Man_Dehyd |
| pfam | Rep_1612_c_14 | Rep_1612_c_14_11 | 11975 | 13033 | - | DUF3048 | DUF3048_C |
| TC | Rep_1612_c_14 | Rep_1612_c_14_12 | 13094 | 14554 | - | 2.A.66.2.16 |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_13 | 14659 | 15378 | - | GT111 |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_14 | 15413 | 16399 | - | GT2 |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_15 | 16401 | 17255 | - | GT2 |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_16 | 17264 | 19615 | - | GT4 |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_17 | 19605 | 20819 | - | GT4 |
| pfam | Rep_1612_c_14 | Rep_1612_c_14_18 | 20912 | 22060 | - | adh_short | 3Beta_HSD | Epimerase | Epimerase | Polysacc_synt_2 | NAD_binding_4 | GDP_Man_Dehyd | GDP_Man_Dehyd |
| NULL(UNKNOWN) | Rep_1612_c_14 | Rep_1612_c_14_19 | 22076 | 22405 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_20 | 23080 | 24231 | - | GT4 |
| pfam | Rep_1612_c_14 | Rep_1612_c_14_21 | 24234 | 25304 | - | EpsG |
| pfam | Rep_1612_c_14 | Rep_1612_c_14_22 | 25301 | 26368 | - | Glyco_tran_WbsX |
| CAZyme | Rep_1612_c_14 | Rep_1612_c_14_23 | 26365 | 27216 | - | GT2 |
Gene ID: Rep_1612_c_14_9
Type: TC
Location: 9912 - 10874 (-)
Type: TC
Location: 9912 - 10874 (-)
Gene ID: Rep_1612_c_14_10
Type: pfam
Location: 10963 - 11964 (-)
Type: pfam
Location: 10963 - 11964 (-)
Gene ID: Rep_1612_c_14_11
Type: pfam
Location: 11975 - 13033 (-)
Type: pfam
Location: 11975 - 13033 (-)
Gene ID: Rep_1612_c_14_12
Type: TC
Location: 13094 - 14554 (-)
Type: TC
Location: 13094 - 14554 (-)
Gene ID: Rep_1612_c_14_13
Type: CAZyme
Location: 14659 - 15378 (-)
Type: CAZyme
Location: 14659 - 15378 (-)
Gene ID: Rep_1612_c_14_14
Type: CAZyme
Location: 15413 - 16399 (-)
Type: CAZyme
Location: 15413 - 16399 (-)
Gene ID: Rep_1612_c_14_15
Type: CAZyme
Location: 16401 - 17255 (-)
Type: CAZyme
Location: 16401 - 17255 (-)
Gene ID: Rep_1612_c_14_16
Type: CAZyme
Location: 17264 - 19615 (-)
Type: CAZyme
Location: 17264 - 19615 (-)
Gene ID: Rep_1612_c_14_17
Type: CAZyme
Location: 19605 - 20819 (-)
Type: CAZyme
Location: 19605 - 20819 (-)
Gene ID: Rep_1612_c_14_18
Type: pfam
Location: 20912 - 22060 (-)
Type: pfam
Location: 20912 - 22060 (-)
Gene ID: Rep_1612_c_14_19
Type:
Location: 22076 - 22405 (-)
Type:
Location: 22076 - 22405 (-)
Gene ID: Rep_1612_c_14_20
Type: CAZyme
Location: 23080 - 24231 (-)
Type: CAZyme
Location: 23080 - 24231 (-)
Gene ID: Rep_1612_c_14_21
Type: pfam
Location: 24234 - 25304 (-)
Type: pfam
Location: 24234 - 25304 (-)
Gene ID: Rep_1612_c_14_22
Type: pfam
Location: 25301 - 26368 (-)
Type: pfam
Location: 25301 - 26368 (-)
Gene ID: Rep_1612_c_14_23
Type: CAZyme
Location: 26365 - 27216 (-)
Type: CAZyme
Location: 26365 - 27216 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
OMSK01
Species
OMSK01 sp934167935
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.