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Cluster: Rep_15_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_15_c_22 Rep_15_c_22_99 116458 117762 + 9.A.40.2.1
TC Rep_15_c_22 Rep_15_c_22_100 117764 119026 + 9.A.40.2.4
TC Rep_15_c_22 Rep_15_c_22_101 119082 120788 - 3.A.1.2.3
TC Rep_15_c_22 Rep_15_c_22_102 120858 122351 - 3.A.1.2.3
TC Rep_15_c_22 Rep_15_c_22_103 122525 123727 - 3.A.1.2.3
pfam Rep_15_c_22 Rep_15_c_22_104 123867 124517 - Cytidylate_kin2
TC Rep_15_c_22 Rep_15_c_22_105 124797 126131 + 3.A.1.1.45
TC Rep_15_c_22 Rep_15_c_22_106 126280 127128 + 3.A.1.1.45
TC Rep_15_c_22 Rep_15_c_22_107 127125 127970 + 3.A.1.1.45
TF Rep_15_c_22 Rep_15_c_22_108 128082 129083 + LacI
CAZyme Rep_15_c_22 Rep_15_c_22_109 129093 130577 + GH77
CAZyme Rep_15_c_22 Rep_15_c_22_110 130646 132838 - CBM4 | GH9
Gene ID: Rep_15_c_22_99
Type: TC
Location: 116458 - 117762 (+)
Gene ID: Rep_15_c_22_100
Type: TC
Location: 117764 - 119026 (+)
Gene ID: Rep_15_c_22_101
Type: TC
Location: 119082 - 120788 (-)
Gene ID: Rep_15_c_22_102
Type: TC
Location: 120858 - 122351 (-)
Gene ID: Rep_15_c_22_103
Type: TC
Location: 122525 - 123727 (-)
Gene ID: Rep_15_c_22_104
Type: pfam
Location: 123867 - 124517 (-)
Gene ID: Rep_15_c_22_105
Type: TC
Location: 124797 - 126131 (+)
Gene ID: Rep_15_c_22_106
Type: TC
Location: 126280 - 127128 (+)
Gene ID: Rep_15_c_22_107
Type: TC
Location: 127125 - 127970 (+)
Gene ID: Rep_15_c_22_108
Type: TF
Location: 128082 - 129083 (+)
Gene ID: Rep_15_c_22_109
Type: CAZyme
Location: 129093 - 130577 (+)
Gene ID: Rep_15_c_22_110
Type: CAZyme
Location: 130646 - 132838 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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