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Cluster: Rep_15_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_15_c_22 Rep_15_c_22_1 186 2612 + GH94
STP Rep_15_c_22 Rep_15_c_22_2 2635 3309 + Pribosyltran
TC Rep_15_c_22 Rep_15_c_22_3 3278 4189 + 3.A.1.14.19
TC Rep_15_c_22 Rep_15_c_22_4 4211 5182 + 3.A.1.14.19
TC Rep_15_c_22 Rep_15_c_22_5 5175 5945 + 3.A.1.14.16
pfam Rep_15_c_22 Rep_15_c_22_6 6012 6830 + PseudoU_synth_2
pfam Rep_15_c_22 Rep_15_c_22_7 6827 7855 + Omptin
TC Rep_15_c_22 Rep_15_c_22_8 8005 9516 + 2.A.21.2.3
CAZyme Rep_15_c_22 Rep_15_c_22_9 9563 11548 - CBM61 | GH53
TF Rep_15_c_22 Rep_15_c_22_10 11804 12565 + HTH_AraC
pfam Rep_15_c_22 Rep_15_c_22_11 12578 13957 - Thi4 | FAD-depend_C
TC Rep_15_c_22 Rep_15_c_22_12 14344 15573 + 2.A.23.3.4
pfam Rep_15_c_22 Rep_15_c_22_13 15575 16336 + Methyltrans_RNA
pfam Rep_15_c_22 Rep_15_c_22_14 16338 17612 + DUF763
TC Rep_15_c_22 Rep_15_c_22_15 17618 18271 - 3.A.1.24.5
TC Rep_15_c_22 Rep_15_c_22_16 18268 19284 - 3.A.1.24.2
pfam Rep_15_c_22 Rep_15_c_22_17 19360 20277 - PseudoU_synth_2
pfam Rep_15_c_22 Rep_15_c_22_18 20409 21209 + LRR_5 | LRR_5
TC Rep_15_c_22 Rep_15_c_22_19 21307 23046 + 3.D.10.1.4
CAZyme Rep_15_c_22 Rep_15_c_22_20 23121 24245 + GT4
Gene ID: Rep_15_c_22_1
Type: CAZyme
Location: 186 - 2612 (+)
Gene ID: Rep_15_c_22_2
Type: STP
Location: 2635 - 3309 (+)
Gene ID: Rep_15_c_22_3
Type: TC
Location: 3278 - 4189 (+)
Gene ID: Rep_15_c_22_4
Type: TC
Location: 4211 - 5182 (+)
Gene ID: Rep_15_c_22_5
Type: TC
Location: 5175 - 5945 (+)
Gene ID: Rep_15_c_22_6
Type: pfam
Location: 6012 - 6830 (+)
Gene ID: Rep_15_c_22_7
Type: pfam
Location: 6827 - 7855 (+)
Gene ID: Rep_15_c_22_8
Type: TC
Location: 8005 - 9516 (+)
Gene ID: Rep_15_c_22_9
Type: CAZyme
Location: 9563 - 11548 (-)
Gene ID: Rep_15_c_22_10
Type: TF
Location: 11804 - 12565 (+)
Gene ID: Rep_15_c_22_11
Type: pfam
Location: 12578 - 13957 (-)
Gene ID: Rep_15_c_22_12
Type: TC
Location: 14344 - 15573 (+)
Gene ID: Rep_15_c_22_13
Type: pfam
Location: 15575 - 16336 (+)
Gene ID: Rep_15_c_22_14
Type: pfam
Location: 16338 - 17612 (+)
Gene ID: Rep_15_c_22_15
Type: TC
Location: 17618 - 18271 (-)
Gene ID: Rep_15_c_22_16
Type: TC
Location: 18268 - 19284 (-)
Gene ID: Rep_15_c_22_17
Type: pfam
Location: 19360 - 20277 (-)
Gene ID: Rep_15_c_22_18
Type: pfam
Location: 20409 - 21209 (+)
Gene ID: Rep_15_c_22_19
Type: TC
Location: 21307 - 23046 (+)
Gene ID: Rep_15_c_22_20
Type: CAZyme
Location: 23121 - 24245 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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