Cluster: Rep_15_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_15
- CGC Family ID: CGCFAM_09395
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_15_c_17 | Rep_15_c_17_1 | 138 | 1544 | + | GH13_28 |
| CAZyme | Rep_15_c_17 | Rep_15_c_17_2 | 1579 | 3573 | + | GH31_1 |
| TC | Rep_15_c_17 | Rep_15_c_17_3 | 3563 | 4054 | - | 3.A.11.1.4 |
| TC | Rep_15_c_17 | Rep_15_c_17_4 | 4286 | 5596 | - | 2.A.40.7.2 |
| pfam | Rep_15_c_17 | Rep_15_c_17_5 | 6019 | 7203 | + | UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N |
| CAZyme | Rep_15_c_17 | Rep_15_c_17_6 | 7210 | 8286 | + | GT4 |
Gene ID: Rep_15_c_17_1
Type: CAZyme
Location: 138 - 1544 (+)
Type: CAZyme
Location: 138 - 1544 (+)
Gene ID: Rep_15_c_17_2
Type: CAZyme
Location: 1579 - 3573 (+)
Type: CAZyme
Location: 1579 - 3573 (+)
Gene ID: Rep_15_c_17_3
Type: TC
Location: 3563 - 4054 (-)
Type: TC
Location: 3563 - 4054 (-)
Gene ID: Rep_15_c_17_4
Type: TC
Location: 4286 - 5596 (-)
Type: TC
Location: 4286 - 5596 (-)
Gene ID: Rep_15_c_17_5
Type: pfam
Location: 6019 - 7203 (+)
Type: pfam
Location: 6019 - 7203 (+)
Gene ID: Rep_15_c_17_6
Type: CAZyme
Location: 7210 - 8286 (+)
Type: CAZyme
Location: 7210 - 8286 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.