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Cluster: Rep_15_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_15_c_7 Rep_15_c_7_14 16207 17121 + 3.A.1.1.11
TC Rep_15_c_7 Rep_15_c_7_15 17133 17990 + 3.A.1.1.11
CAZyme Rep_15_c_7 Rep_15_c_7_16 17993 19357 + GH43_4
TF Rep_15_c_7 Rep_15_c_7_17 19380 20297 + HTH_5
CAZyme Rep_15_c_7 Rep_15_c_7_18 20299 21756 + GH43_4
pfam Rep_15_c_7 Rep_15_c_7_19 21760 22413 - DUF624
CAZyme Rep_15_c_7 Rep_15_c_7_20 22413 23375 - GH43_26
NULL(UNKNOWN) Rep_15_c_7 Rep_15_c_7_21 23585 24346 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_15_c_7 Rep_15_c_7_22 24343 25023 + Metallophos | Metallophos_2
TC Rep_15_c_7 Rep_15_c_7_23 25035 27161 + 3.A.1.30.1
TC Rep_15_c_7 Rep_15_c_7_24 27194 28546 + 2.A.45.2.2
Gene ID: Rep_15_c_7_14
Type: TC
Location: 16207 - 17121 (+)
Gene ID: Rep_15_c_7_15
Type: TC
Location: 17133 - 17990 (+)
Gene ID: Rep_15_c_7_16
Type: CAZyme
Location: 17993 - 19357 (+)
Gene ID: Rep_15_c_7_17
Type: TF
Location: 19380 - 20297 (+)
Gene ID: Rep_15_c_7_18
Type: CAZyme
Location: 20299 - 21756 (+)
Gene ID: Rep_15_c_7_19
Type: pfam
Location: 21760 - 22413 (-)
Gene ID: Rep_15_c_7_20
Type: CAZyme
Location: 22413 - 23375 (-)
Gene ID: Rep_15_c_7_21
Type:
Location: 23585 - 24346 (+)
Gene ID: Rep_15_c_7_22
Type: pfam
Location: 24343 - 25023 (+)
Gene ID: Rep_15_c_7_23
Type: TC
Location: 25035 - 27161 (+)
Gene ID: Rep_15_c_7_24
Type: TC
Location: 27194 - 28546 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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