Cluster: Rep_15_CGC29
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_15
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_15_c_58 | Rep_15_c_58_46 | 54790 | 55824 | - | 3.A.1.2.4 |
| TF | Rep_15_c_58 | Rep_15_c_58_47 | 55821 | 57386 | - | HTH_AraC | HTH_AraC |
| TC | Rep_15_c_58 | Rep_15_c_58_48 | 57379 | 58878 | - | 8.A.59.2.1 |
| pfam | Rep_15_c_58 | Rep_15_c_58_49 | 58856 | 59854 | - | Peripla_BP_4 |
| pfam | Rep_15_c_58 | Rep_15_c_58_50 | 59927 | 60874 | - | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | Rep_15_c_58 | Rep_15_c_58_51 | 60911 | 61909 | - | GH130_2 |
| CAZyme | Rep_15_c_58 | Rep_15_c_58_52 | 61999 | 63171 | - | GH130_1 |
| TC | Rep_15_c_58 | Rep_15_c_58_53 | 63526 | 65259 | + | 1.A.11.2.7 |
Gene ID: Rep_15_c_58_46
Type: TC
Location: 54790 - 55824 (-)
Type: TC
Location: 54790 - 55824 (-)
Gene ID: Rep_15_c_58_47
Type: TF
Location: 55821 - 57386 (-)
Type: TF
Location: 55821 - 57386 (-)
Gene ID: Rep_15_c_58_48
Type: TC
Location: 57379 - 58878 (-)
Type: TC
Location: 57379 - 58878 (-)
Gene ID: Rep_15_c_58_49
Type: pfam
Location: 58856 - 59854 (-)
Type: pfam
Location: 58856 - 59854 (-)
Gene ID: Rep_15_c_58_50
Type: pfam
Location: 59927 - 60874 (-)
Type: pfam
Location: 59927 - 60874 (-)
Gene ID: Rep_15_c_58_51
Type: CAZyme
Location: 60911 - 61909 (-)
Type: CAZyme
Location: 60911 - 61909 (-)
Gene ID: Rep_15_c_58_52
Type: CAZyme
Location: 61999 - 63171 (-)
Type: CAZyme
Location: 61999 - 63171 (-)
Gene ID: Rep_15_c_58_53
Type: TC
Location: 63526 - 65259 (+)
Type: TC
Location: 63526 - 65259 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.