Cluster: Rep_15_CGC28
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_15
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_15_c_54 | Rep_15_c_54_7 | 6477 | 7574 | + | GH3 |
| pfam | Rep_15_c_54 | Rep_15_c_54_8 | 7585 | 8457 | + | Methyltr_RsmB-F |
| TC | Rep_15_c_54 | Rep_15_c_54_9 | 8498 | 9763 | + | 8.A.59.4.2 |
Gene ID: Rep_15_c_54_7
Type: CAZyme
Location: 6477 - 7574 (+)
Type: CAZyme
Location: 6477 - 7574 (+)
Gene ID: Rep_15_c_54_8
Type: pfam
Location: 7585 - 8457 (+)
Type: pfam
Location: 7585 - 8457 (+)
Gene ID: Rep_15_c_54_9
Type: TC
Location: 8498 - 9763 (+)
Type: TC
Location: 8498 - 9763 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.