Cluster: Rep_15_CGC2
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_15
- CGC Family ID: CGCFAM_09394
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_15_c_6 | Rep_15_c_6_8 | 7476 | 8243 | - | GH23 |
| NULL(UNKNOWN) | Rep_15_c_6 | Rep_15_c_6_9 | 8451 | 8957 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_15_c_6 | Rep_15_c_6_10 | 9041 | 9652 | - | CDP-OH_P_transf |
| CAZyme | Rep_15_c_6 | Rep_15_c_6_11 | 9722 | 10738 | - | CBM50 |
| pfam | Rep_15_c_6 | Rep_15_c_6_12 | 10725 | 11369 | - | FtsJ |
| TC | Rep_15_c_6 | Rep_15_c_6_13 | 11618 | 13558 | + | 4.C.1.1.14 |
Gene ID: Rep_15_c_6_8
Type: CAZyme
Location: 7476 - 8243 (-)
Type: CAZyme
Location: 7476 - 8243 (-)
Gene ID: Rep_15_c_6_9
Type:
Location: 8451 - 8957 (-)
Type:
Location: 8451 - 8957 (-)
Gene ID: Rep_15_c_6_10
Type: pfam
Location: 9041 - 9652 (-)
Type: pfam
Location: 9041 - 9652 (-)
Gene ID: Rep_15_c_6_11
Type: CAZyme
Location: 9722 - 10738 (-)
Type: CAZyme
Location: 9722 - 10738 (-)
Gene ID: Rep_15_c_6_12
Type: pfam
Location: 10725 - 11369 (-)
Type: pfam
Location: 10725 - 11369 (-)
Gene ID: Rep_15_c_6_13
Type: TC
Location: 11618 - 13558 (+)
Type: TC
Location: 11618 - 13558 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.