Cluster: Rep_15_CGC19
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_15
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_15_c_33 | Rep_15_c_33_59 | 52717 | 53739 | - | CE8 |
| pfam | Rep_15_c_33 | Rep_15_c_33_60 | 53809 | 54294 | - | Fer4_12 |
| pfam | Rep_15_c_33 | Rep_15_c_33_61 | 54294 | 56471 | - | Gly_radical | ATP-cone | NRDD |
| CAZyme | Rep_15_c_33 | Rep_15_c_33_62 | 56945 | 57982 | + | GH5_2 |
| TC | Rep_15_c_33 | Rep_15_c_33_63 | 57984 | 58952 | - | 3.A.1.5.20 |
| TC | Rep_15_c_33 | Rep_15_c_33_64 | 59016 | 61091 | - | 3.A.1.5.15 |
| TC | Rep_15_c_33 | Rep_15_c_33_65 | 61093 | 62196 | - | 3.A.1.5.20 |
Gene ID: Rep_15_c_33_59
Type: CAZyme
Location: 52717 - 53739 (-)
Type: CAZyme
Location: 52717 - 53739 (-)
Gene ID: Rep_15_c_33_60
Type: pfam
Location: 53809 - 54294 (-)
Type: pfam
Location: 53809 - 54294 (-)
Gene ID: Rep_15_c_33_61
Type: pfam
Location: 54294 - 56471 (-)
Type: pfam
Location: 54294 - 56471 (-)
Gene ID: Rep_15_c_33_62
Type: CAZyme
Location: 56945 - 57982 (+)
Type: CAZyme
Location: 56945 - 57982 (+)
Gene ID: Rep_15_c_33_63
Type: TC
Location: 57984 - 58952 (-)
Type: TC
Location: 57984 - 58952 (-)
Gene ID: Rep_15_c_33_64
Type: TC
Location: 59016 - 61091 (-)
Type: TC
Location: 59016 - 61091 (-)
Gene ID: Rep_15_c_33_65
Type: TC
Location: 61093 - 62196 (-)
Type: TC
Location: 61093 - 62196 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.