Cluster: Rep_15_CGC17
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_15
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_15_c_33 | Rep_15_c_33_13 | 10135 | 11583 | + | 9.B.174.1.1 |
| pfam | Rep_15_c_33 | Rep_15_c_33_14 | 11580 | 12383 | + | Methyltrans_RNA |
| CAZyme | Rep_15_c_33 | Rep_15_c_33_15 | 12387 | 13127 | + | GT26 |
| TC | Rep_15_c_33 | Rep_15_c_33_16 | 13172 | 14230 | + | 3.A.23.1.1 |
Gene ID: Rep_15_c_33_13
Type: TC
Location: 10135 - 11583 (+)
Type: TC
Location: 10135 - 11583 (+)
Gene ID: Rep_15_c_33_14
Type: pfam
Location: 11580 - 12383 (+)
Type: pfam
Location: 11580 - 12383 (+)
Gene ID: Rep_15_c_33_15
Type: CAZyme
Location: 12387 - 13127 (+)
Type: CAZyme
Location: 12387 - 13127 (+)
Gene ID: Rep_15_c_33_16
Type: TC
Location: 13172 - 14230 (+)
Type: TC
Location: 13172 - 14230 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.