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Cluster: Rep_15_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_15_c_32 Rep_15_c_32_41 48426 49994 + 8.A.59.4.2
pfam Rep_15_c_32 Rep_15_c_32_42 50076 50438 + Hpt
TC Rep_15_c_32 Rep_15_c_32_43 50714 51397 + 3.A.1.120.5
TC Rep_15_c_32 Rep_15_c_32_44 51511 52245 + 3.A.1.120.5
CAZyme Rep_15_c_32 Rep_15_c_32_45 52302 53342 - GT2
pfam Rep_15_c_32 Rep_15_c_32_46 53344 54099 - LicD
CAZyme Rep_15_c_32 Rep_15_c_32_47 54092 54883 - GT32
CAZyme Rep_15_c_32 Rep_15_c_32_48 54880 55731 - GT2
pfam Rep_15_c_32 Rep_15_c_32_49 55728 56786 - EpsG
CAZyme Rep_15_c_32 Rep_15_c_32_50 56790 57512 - GT32
CAZyme Rep_15_c_32 Rep_15_c_32_51 57509 58432 - GT2
TC Rep_15_c_32 Rep_15_c_32_52 58429 59931 - 2.A.66.2.10
Gene ID: Rep_15_c_32_41
Type: TC
Location: 48426 - 49994 (+)
Gene ID: Rep_15_c_32_42
Type: pfam
Location: 50076 - 50438 (+)
Gene ID: Rep_15_c_32_43
Type: TC
Location: 50714 - 51397 (+)
Gene ID: Rep_15_c_32_44
Type: TC
Location: 51511 - 52245 (+)
Gene ID: Rep_15_c_32_45
Type: CAZyme
Location: 52302 - 53342 (-)
Gene ID: Rep_15_c_32_46
Type: pfam
Location: 53344 - 54099 (-)
Gene ID: Rep_15_c_32_47
Type: CAZyme
Location: 54092 - 54883 (-)
Gene ID: Rep_15_c_32_48
Type: CAZyme
Location: 54880 - 55731 (-)
Gene ID: Rep_15_c_32_49
Type: pfam
Location: 55728 - 56786 (-)
Gene ID: Rep_15_c_32_50
Type: CAZyme
Location: 56790 - 57512 (-)
Gene ID: Rep_15_c_32_51
Type: CAZyme
Location: 57509 - 58432 (-)
Gene ID: Rep_15_c_32_52
Type: TC
Location: 58429 - 59931 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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