Cluster: Rep_15_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_15
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_15_c_31 | Rep_15_c_31_2 | 1538 | 2500 | + | 3.A.1.1.4 |
| TC | Rep_15_c_31 | Rep_15_c_31_3 | 2659 | 3498 | + | 3.A.1.1.36 |
| CAZyme | Rep_15_c_31 | Rep_15_c_31_4 | 3558 | 5159 | + | CBM91 | GH43_11 |
| TF | Rep_15_c_31 | Rep_15_c_31_5 | 5315 | 6334 | + | LacI |
| TC | Rep_15_c_31 | Rep_15_c_31_6 | 6510 | 7862 | + | 2.A.66.1.28 |
Gene ID: Rep_15_c_31_2
Type: TC
Location: 1538 - 2500 (+)
Type: TC
Location: 1538 - 2500 (+)
Gene ID: Rep_15_c_31_3
Type: TC
Location: 2659 - 3498 (+)
Type: TC
Location: 2659 - 3498 (+)
Gene ID: Rep_15_c_31_4
Type: CAZyme
Location: 3558 - 5159 (+)
Type: CAZyme
Location: 3558 - 5159 (+)
Gene ID: Rep_15_c_31_5
Type: TF
Location: 5315 - 6334 (+)
Type: TF
Location: 5315 - 6334 (+)
Gene ID: Rep_15_c_31_6
Type: TC
Location: 6510 - 7862 (+)
Type: TC
Location: 6510 - 7862 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.