Cluster: Rep_15_CGC12
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_15
- CGC Family ID: CGCFAM_02220
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_15_c_30 | Rep_15_c_30_30 | 36062 | 37972 | + | CBM61 | GH53 |
| NULL(UNKNOWN) | Rep_15_c_30 | Rep_15_c_30_31 | 38019 | 38858 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_15_c_30 | Rep_15_c_30_32 | 39004 | 40173 | + | GH53 |
| TC | Rep_15_c_30 | Rep_15_c_30_33 | 40277 | 42190 | + | 3.A.1.120.6 |
Gene ID: Rep_15_c_30_30
Type: CAZyme
Location: 36062 - 37972 (+)
Type: CAZyme
Location: 36062 - 37972 (+)
Gene ID: Rep_15_c_30_31
Type:
Location: 38019 - 38858 (+)
Type:
Location: 38019 - 38858 (+)
Gene ID: Rep_15_c_30_32
Type: CAZyme
Location: 39004 - 40173 (+)
Type: CAZyme
Location: 39004 - 40173 (+)
Gene ID: Rep_15_c_30_33
Type: TC
Location: 40277 - 42190 (+)
Type: TC
Location: 40277 - 42190 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.