Cluster: Rep_15_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_15
- CGC Family ID: CGCFAM_00614
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_15_c_28 | Rep_15_c_28_15 | 14995 | 16575 | - | 2.A.16.2.2 |
| peptidase | Rep_15_c_28 | Rep_15_c_28_16 | 16921 | 18483 | - | S16.UNW |
| CAZyme | Rep_15_c_28 | Rep_15_c_28_17 | 18615 | 19790 | + | GT104 |
| pfam | Rep_15_c_28 | Rep_15_c_28_18 | 19883 | 20455 | + | EFP | EFP_N | Elong-fact-P_C |
| NULL(UNKNOWN) | Rep_15_c_28 | Rep_15_c_28_19 | 20643 | 20741 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_15_c_28 | Rep_15_c_28_20 | 20952 | 22388 | + | 2.A.25.1.4 |
Gene ID: Rep_15_c_28_15
Type: TC
Location: 14995 - 16575 (-)
Type: TC
Location: 14995 - 16575 (-)
Gene ID: Rep_15_c_28_16
Type: peptidase
Location: 16921 - 18483 (-)
Type: peptidase
Location: 16921 - 18483 (-)
Gene ID: Rep_15_c_28_17
Type: CAZyme
Location: 18615 - 19790 (+)
Type: CAZyme
Location: 18615 - 19790 (+)
Gene ID: Rep_15_c_28_18
Type: pfam
Location: 19883 - 20455 (+)
Type: pfam
Location: 19883 - 20455 (+)
Gene ID: Rep_15_c_28_19
Type:
Location: 20643 - 20741 (+)
Type:
Location: 20643 - 20741 (+)
Gene ID: Rep_15_c_28_20
Type: TC
Location: 20952 - 22388 (+)
Type: TC
Location: 20952 - 22388 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Treponema_D
Species
Treponema_D sp017935745
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.