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Cluster: Rep_159_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_159_c_90 Rep_159_c_90_20 23392 24189 + GT2
NULL(UNKNOWN) Rep_159_c_90 Rep_159_c_90_21 24206 25639 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_159_c_90 Rep_159_c_90_22 25995 27017 + GT2
STP Rep_159_c_90 Rep_159_c_90_23 27033 28247 + Aminotran_1_2
TC Rep_159_c_90 Rep_159_c_90_24 28244 28828 + 9.B.18.1.3
TC Rep_159_c_90 Rep_159_c_90_25 28837 30756 + 9.B.18.2.1
TC Rep_159_c_90 Rep_159_c_90_26 30753 31325 + 9.B.18.1.3
pfam Rep_159_c_90 Rep_159_c_90_27 31401 31847 - Lipocalin_8
TC Rep_159_c_90 Rep_159_c_90_28 31844 33379 - 1.B.73.2.2
Gene ID: Rep_159_c_90_20
Type: CAZyme
Location: 23392 - 24189 (+)
Gene ID: Rep_159_c_90_21
Type:
Location: 24206 - 25639 (+)
Gene ID: Rep_159_c_90_22
Type: CAZyme
Location: 25995 - 27017 (+)
Gene ID: Rep_159_c_90_23
Type: STP
Location: 27033 - 28247 (+)
Gene ID: Rep_159_c_90_24
Type: TC
Location: 28244 - 28828 (+)
Gene ID: Rep_159_c_90_25
Type: TC
Location: 28837 - 30756 (+)
Gene ID: Rep_159_c_90_26
Type: TC
Location: 30753 - 31325 (+)
Gene ID: Rep_159_c_90_27
Type: pfam
Location: 31401 - 31847 (-)
Gene ID: Rep_159_c_90_28
Type: TC
Location: 31844 - 33379 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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