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Cluster: Rep_159_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_159_c_84 Rep_159_c_84_2 1154 3100 - GH51_2
TF Rep_159_c_84 Rep_159_c_84_3 3599 4228 + GerE
STP Rep_159_c_84 Rep_159_c_84_4 4278 5282 + FecR
TC Rep_159_c_84 Rep_159_c_84_5 5328 8681 + 1.B.14.6.1
TC Rep_159_c_84 Rep_159_c_84_6 8684 10531 + 8.A.46.1.5
pfam Rep_159_c_84 Rep_159_c_84_7 10544 11242 + DUF3823 | DUF3823_C
CAZyme Rep_159_c_84 Rep_159_c_84_8 11391 14048 + GH2
CAZyme Rep_159_c_84 Rep_159_c_84_9 14045 15181 + GH130_3
Gene ID: Rep_159_c_84_2
Type: CAZyme
Location: 1154 - 3100 (-)
Gene ID: Rep_159_c_84_3
Type: TF
Location: 3599 - 4228 (+)
Gene ID: Rep_159_c_84_4
Type: STP
Location: 4278 - 5282 (+)
Gene ID: Rep_159_c_84_5
Type: TC
Location: 5328 - 8681 (+)
Gene ID: Rep_159_c_84_6
Type: TC
Location: 8684 - 10531 (+)
Gene ID: Rep_159_c_84_7
Type: pfam
Location: 10544 - 11242 (+)
Gene ID: Rep_159_c_84_8
Type: CAZyme
Location: 11391 - 14048 (+)
Gene ID: Rep_159_c_84_9
Type: CAZyme
Location: 14045 - 15181 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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