Cluster: Rep_1579_CGC1
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_1579
- CGC Family ID: CGCFAM_00074
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1579_c_0 | Rep_1579_c_0_479 | 426552 | 427640 | + | GT4 |
| CAZyme | Rep_1579_c_0 | Rep_1579_c_0_480 | 427633 | 428049 | + | GT2 |
| NULL(UNKNOWN) | Rep_1579_c_0 | Rep_1579_c_0_481 | 428006 | 428167 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_1579_c_0 | Rep_1579_c_0_482 | 428251 | 428553 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1579_c_0 | Rep_1579_c_0_483 | 428558 | 429517 | + | GT2 |
| CAZyme | Rep_1579_c_0 | Rep_1579_c_0_484 | 429514 | 430485 | + | GT2 |
| pfam | Rep_1579_c_0 | Rep_1579_c_0_485 | 430482 | 431798 | + | DUF6056 |
| pfam | Rep_1579_c_0 | Rep_1579_c_0_486 | 431876 | 432667 | + | ABC2_membrane |
| TC | Rep_1579_c_0 | Rep_1579_c_0_487 | 432680 | 433483 | + | 3.A.1.103.1 |
| CAZyme | Rep_1579_c_0 | Rep_1579_c_0_488 | 433498 | 436074 | + | GT2 |
Gene ID: Rep_1579_c_0_479
Type: CAZyme
Location: 426552 - 427640 (+)
Type: CAZyme
Location: 426552 - 427640 (+)
Gene ID: Rep_1579_c_0_480
Type: CAZyme
Location: 427633 - 428049 (+)
Type: CAZyme
Location: 427633 - 428049 (+)
Gene ID: Rep_1579_c_0_481
Type:
Location: 428006 - 428167 (+)
Type:
Location: 428006 - 428167 (+)
Gene ID: Rep_1579_c_0_482
Type:
Location: 428251 - 428553 (+)
Type:
Location: 428251 - 428553 (+)
Gene ID: Rep_1579_c_0_483
Type: CAZyme
Location: 428558 - 429517 (+)
Type: CAZyme
Location: 428558 - 429517 (+)
Gene ID: Rep_1579_c_0_484
Type: CAZyme
Location: 429514 - 430485 (+)
Type: CAZyme
Location: 429514 - 430485 (+)
Gene ID: Rep_1579_c_0_485
Type: pfam
Location: 430482 - 431798 (+)
Type: pfam
Location: 430482 - 431798 (+)
Gene ID: Rep_1579_c_0_486
Type: pfam
Location: 431876 - 432667 (+)
Type: pfam
Location: 431876 - 432667 (+)
Gene ID: Rep_1579_c_0_487
Type: TC
Location: 432680 - 433483 (+)
Type: TC
Location: 432680 - 433483 (+)
Gene ID: Rep_1579_c_0_488
Type: CAZyme
Location: 433498 - 436074 (+)
Type: CAZyme
Location: 433498 - 436074 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
CAG-417
Species
CAG-417 sp000432835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_1579_c_0_480 | omnivore > vegetarian | 21.35765 | 0.03894 |
| Rep_1579_c_0_481 | omnivore > vegetarian | 22.46915 | 0.03894 |