Cluster: Rep_1562_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1562
- CGC Family ID: CGCFAM_02689
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1562_c_17 | Rep_1562_c_17_23 | 24375 | 26936 | - | 3.A.1.137.2 |
| TC | Rep_1562_c_17 | Rep_1562_c_17_24 | 26941 | 27642 | - | 3.A.1.122.14 |
| NULL(UNKNOWN) | Rep_1562_c_17 | Rep_1562_c_17_25 | 28029 | 30062 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_1562_c_17 | Rep_1562_c_17_26 | 30419 | 32071 | + | tRNA-synt_1c |
| TC | Rep_1562_c_17 | Rep_1562_c_17_27 | 32153 | 33283 | + | 2.A.86.1.11 |
| CAZyme | Rep_1562_c_17 | Rep_1562_c_17_28 | 33319 | 34329 | - | GT4 |
Gene ID: Rep_1562_c_17_23
Type: TC
Location: 24375 - 26936 (-)
Type: TC
Location: 24375 - 26936 (-)
Gene ID: Rep_1562_c_17_24
Type: TC
Location: 26941 - 27642 (-)
Type: TC
Location: 26941 - 27642 (-)
Gene ID: Rep_1562_c_17_25
Type:
Location: 28029 - 30062 (+)
Type:
Location: 28029 - 30062 (+)
Gene ID: Rep_1562_c_17_26
Type: pfam
Location: 30419 - 32071 (+)
Type: pfam
Location: 30419 - 32071 (+)
Gene ID: Rep_1562_c_17_27
Type: TC
Location: 32153 - 33283 (+)
Type: TC
Location: 32153 - 33283 (+)
Gene ID: Rep_1562_c_17_28
Type: CAZyme
Location: 33319 - 34329 (-)
Type: CAZyme
Location: 33319 - 34329 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_I
Class
Bacilli_A
Order
RF39
Family
UBA660
Genus
Scybalousia
Species
Scybalousia sp900543675
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.