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Cluster: Rep_1530_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1530_c_6 Rep_1530_c_6_10 12004 13761 + 3.A.11.1.3
TC Rep_1530_c_6 Rep_1530_c_6_11 13772 14533 + 3.A.11.1.3
pfam Rep_1530_c_6 Rep_1530_c_6_12 14626 16116 + Phosphodiest | Metalloenzyme | iPGM_N
pfam Rep_1530_c_6 Rep_1530_c_6_13 16153 16767 + QueH
CAZyme Rep_1530_c_6 Rep_1530_c_6_14 16777 18183 + CE4
CAZyme Rep_1530_c_6 Rep_1530_c_6_15 18274 19131 + CE4
TF Rep_1530_c_6 Rep_1530_c_6_16 19266 19715 + MarR
TC Rep_1530_c_6 Rep_1530_c_6_17 19709 21469 + 3.A.1.135.6
TC Rep_1530_c_6 Rep_1530_c_6_18 21462 23789 + 3.A.1.135.6
Gene ID: Rep_1530_c_6_10
Type: TC
Location: 12004 - 13761 (+)
Gene ID: Rep_1530_c_6_11
Type: TC
Location: 13772 - 14533 (+)
Gene ID: Rep_1530_c_6_12
Type: pfam
Location: 14626 - 16116 (+)
Gene ID: Rep_1530_c_6_13
Type: pfam
Location: 16153 - 16767 (+)
Gene ID: Rep_1530_c_6_14
Type: CAZyme
Location: 16777 - 18183 (+)
Gene ID: Rep_1530_c_6_15
Type: CAZyme
Location: 18274 - 19131 (+)
Gene ID: Rep_1530_c_6_16
Type: TF
Location: 19266 - 19715 (+)
Gene ID: Rep_1530_c_6_17
Type: TC
Location: 19709 - 21469 (+)
Gene ID: Rep_1530_c_6_18
Type: TC
Location: 21462 - 23789 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_I
→
Class
Bacilli_A
→
Order
RF39
→
Family
UBA660
→
Genus
Coprosoma
→
Species
Coprosoma sp000432855

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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