Cluster: Rep_151_CGC16
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_151
- CGC Family ID: CGCFAM_00034
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_151_c_11 | Rep_151_c_11_12 | 20100 | 21728 | - | 1.C.12.1.10 |
| NULL(UNKNOWN) | Rep_151_c_11 | Rep_151_c_11_13 | 22171 | 22293 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_151_c_11 | Rep_151_c_11_14 | 22517 | 24319 | - | GH13_6 |
| pfam | Rep_151_c_11 | Rep_151_c_11_15 | 24624 | 26219 | - | SusE | SusF_SusE |
| TC | Rep_151_c_11 | Rep_151_c_11_16 | 26243 | 27865 | - | 8.A.46.1.1 |
| TC | Rep_151_c_11 | Rep_151_c_11_17 | 27880 | 30879 | - | 1.B.14.6.1 |
| TF | Rep_151_c_11 | Rep_151_c_11_18 | 31222 | 32247 | + | LacI |
| TC | Rep_151_c_11 | Rep_151_c_11_19 | 32545 | 33861 | + | 2.A.2.6.2 |
| CAZyme | Rep_151_c_11 | Rep_151_c_11_20 | 34543 | 37248 | + | GH77 |
| CAZyme | Rep_151_c_11 | Rep_151_c_11_21 | 37318 | 39450 | + | GH97 |
| CAZyme | Rep_151_c_11 | Rep_151_c_11_22 | 39469 | 41421 | + | GH13_14 |
| pfam | Rep_151_c_11 | Rep_151_c_11_23 | 41742 | 42149 | + | PDDEXK_3 |
| CAZyme | Rep_151_c_11 | Rep_151_c_11_24 | 42464 | 44383 | + | GH13_46 |
Gene ID: Rep_151_c_11_12
Type: TC
Location: 20100 - 21728 (-)
Type: TC
Location: 20100 - 21728 (-)
Gene ID: Rep_151_c_11_13
Type:
Location: 22171 - 22293 (+)
Type:
Location: 22171 - 22293 (+)
Gene ID: Rep_151_c_11_14
Type: CAZyme
Location: 22517 - 24319 (-)
Type: CAZyme
Location: 22517 - 24319 (-)
Gene ID: Rep_151_c_11_15
Type: pfam
Location: 24624 - 26219 (-)
Type: pfam
Location: 24624 - 26219 (-)
Gene ID: Rep_151_c_11_16
Type: TC
Location: 26243 - 27865 (-)
Type: TC
Location: 26243 - 27865 (-)
Gene ID: Rep_151_c_11_17
Type: TC
Location: 27880 - 30879 (-)
Type: TC
Location: 27880 - 30879 (-)
Gene ID: Rep_151_c_11_18
Type: TF
Location: 31222 - 32247 (+)
Type: TF
Location: 31222 - 32247 (+)
Gene ID: Rep_151_c_11_19
Type: TC
Location: 32545 - 33861 (+)
Type: TC
Location: 32545 - 33861 (+)
Gene ID: Rep_151_c_11_20
Type: CAZyme
Location: 34543 - 37248 (+)
Type: CAZyme
Location: 34543 - 37248 (+)
Gene ID: Rep_151_c_11_21
Type: CAZyme
Location: 37318 - 39450 (+)
Type: CAZyme
Location: 37318 - 39450 (+)
Gene ID: Rep_151_c_11_22
Type: CAZyme
Location: 39469 - 41421 (+)
Type: CAZyme
Location: 39469 - 41421 (+)
Gene ID: Rep_151_c_11_23
Type: pfam
Location: 41742 - 42149 (+)
Type: pfam
Location: 41742 - 42149 (+)
Gene ID: Rep_151_c_11_24
Type: CAZyme
Location: 42464 - 44383 (+)
Type: CAZyme
Location: 42464 - 44383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella sp900547085
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.