Cluster: Rep_14_CGC13
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_14
- CGC Family ID: CGCFAM_04576
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_14_c_337 | Rep_14_c_337_1 | 1 | 1266 | + | GH5_46 |
| TC | Rep_14_c_337 | Rep_14_c_337_2 | 1350 | 2912 | + | 3.A.18.1.1 |
| CAZyme | Rep_14_c_337 | Rep_14_c_337_3 | 2934 | 4055 | + | GT28 |
| pfam | Rep_14_c_337 | Rep_14_c_337_4 | 4056 | 4979 | + | UDG |
| TC | Rep_14_c_337 | Rep_14_c_337_5 | 4985 | 7030 | + | 3.A.11.3.1 |
Gene ID: Rep_14_c_337_1
Type: CAZyme
Location: 1 - 1266 (+)
Type: CAZyme
Location: 1 - 1266 (+)
Gene ID: Rep_14_c_337_2
Type: TC
Location: 1350 - 2912 (+)
Type: TC
Location: 1350 - 2912 (+)
Gene ID: Rep_14_c_337_3
Type: CAZyme
Location: 2934 - 4055 (+)
Type: CAZyme
Location: 2934 - 4055 (+)
Gene ID: Rep_14_c_337_4
Type: pfam
Location: 4056 - 4979 (+)
Type: pfam
Location: 4056 - 4979 (+)
Gene ID: Rep_14_c_337_5
Type: TC
Location: 4985 - 7030 (+)
Type: TC
Location: 4985 - 7030 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Gallitreponema
Species
Gallitreponema excrementavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.