Cluster: Rep_14_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_14
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_14_c_35 | Rep_14_c_35_2 | 1427 | 2200 | + | 3.A.1.3.27 |
| TC | Rep_14_c_35 | Rep_14_c_35_3 | 2402 | 3103 | + | 3.A.1.3.6 |
| TC | Rep_14_c_35 | Rep_14_c_35_4 | 3090 | 3812 | + | 3.A.1.3.25 |
| CAZyme | Rep_14_c_35 | Rep_14_c_35_5 | 4007 | 5578 | - | GH13_5 |
Gene ID: Rep_14_c_35_2
Type: TC
Location: 1427 - 2200 (+)
Type: TC
Location: 1427 - 2200 (+)
Gene ID: Rep_14_c_35_3
Type: TC
Location: 2402 - 3103 (+)
Type: TC
Location: 2402 - 3103 (+)
Gene ID: Rep_14_c_35_4
Type: TC
Location: 3090 - 3812 (+)
Type: TC
Location: 3090 - 3812 (+)
Gene ID: Rep_14_c_35_5
Type: CAZyme
Location: 4007 - 5578 (-)
Type: CAZyme
Location: 4007 - 5578 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Spirochaetota
Class
Spirochaetia
Order
Treponematales
Family
Treponemataceae
Genus
Gallitreponema
Species
Gallitreponema excrementavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.