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Cluster: Rep_149_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_149_c_28 Rep_149_c_28_2 277 1602 - 2.A.2.6.2
TF Rep_149_c_28 Rep_149_c_28_3 1662 2687 - LacI
TC Rep_149_c_28 Rep_149_c_28_4 2955 6059 + 1.B.14.6.1
TC Rep_149_c_28 Rep_149_c_28_5 6109 7695 + 8.A.46.1.1
pfam Rep_149_c_28 Rep_149_c_28_6 7766 8968 + SusE | SusF_SusE
pfam Rep_149_c_28 Rep_149_c_28_7 9020 10072 + SusF_SusE
CAZyme Rep_149_c_28 Rep_149_c_28_8 10195 12210 + GH13_6
Gene ID: Rep_149_c_28_2
Type: TC
Location: 277 - 1602 (-)
Gene ID: Rep_149_c_28_3
Type: TF
Location: 1662 - 2687 (-)
Gene ID: Rep_149_c_28_4
Type: TC
Location: 2955 - 6059 (+)
Gene ID: Rep_149_c_28_5
Type: TC
Location: 6109 - 7695 (+)
Gene ID: Rep_149_c_28_6
Type: pfam
Location: 7766 - 8968 (+)
Gene ID: Rep_149_c_28_7
Type: pfam
Location: 9020 - 10072 (+)
Gene ID: Rep_149_c_28_8
Type: CAZyme
Location: 10195 - 12210 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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