Cluster: Rep_148_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_148
- CGC Family ID: CGCFAM_00095
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_148_c_5 | Rep_148_c_5_31 | 37006 | 40185 | + | 1.B.14.6.1 |
| TC | Rep_148_c_5 | Rep_148_c_5_32 | 40201 | 41913 | + | 8.A.46.1.3 |
| CAZyme | Rep_148_c_5 | Rep_148_c_5_33 | 42007 | 43935 | + | PL33_1 |
| CAZyme | Rep_148_c_5 | Rep_148_c_5_34 | 44025 | 45275 | + | GH88 |
| NULL(UNKNOWN) | Rep_148_c_5 | Rep_148_c_5_35 | 45658 | 45981 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_148_c_5 | Rep_148_c_5_36 | 46021 | 47646 | + | 1.C.12.1.10 |
| peptidase | Rep_148_c_5 | Rep_148_c_5_37 | 47795 | 50017 | + | C10.UPW |
| CAZyme | Rep_148_c_5 | Rep_148_c_5_38 | 50892 | 53336 | - | PL29 |
| NULL(UNKNOWN) | Rep_148_c_5 | Rep_148_c_5_39 | 53354 | 54205 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_148_c_5 | Rep_148_c_5_40 | 54240 | 57269 | - | PL8_2 |
| pfam | Rep_148_c_5 | Rep_148_c_5_41 | 57295 | 58326 | - | DUF5017 |
| TC | Rep_148_c_5 | Rep_148_c_5_42 | 58363 | 60099 | - | 8.A.46.1.3 |
| TC | Rep_148_c_5 | Rep_148_c_5_43 | 60125 | 63322 | - | 1.B.14.6.1 |
Gene ID: Rep_148_c_5_31
Type: TC
Location: 37006 - 40185 (+)
Type: TC
Location: 37006 - 40185 (+)
Gene ID: Rep_148_c_5_32
Type: TC
Location: 40201 - 41913 (+)
Type: TC
Location: 40201 - 41913 (+)
Gene ID: Rep_148_c_5_33
Type: CAZyme
Location: 42007 - 43935 (+)
Type: CAZyme
Location: 42007 - 43935 (+)
Gene ID: Rep_148_c_5_34
Type: CAZyme
Location: 44025 - 45275 (+)
Type: CAZyme
Location: 44025 - 45275 (+)
Gene ID: Rep_148_c_5_35
Type:
Location: 45658 - 45981 (-)
Type:
Location: 45658 - 45981 (-)
Gene ID: Rep_148_c_5_36
Type: TC
Location: 46021 - 47646 (+)
Type: TC
Location: 46021 - 47646 (+)
Gene ID: Rep_148_c_5_37
Type: peptidase
Location: 47795 - 50017 (+)
Type: peptidase
Location: 47795 - 50017 (+)
Gene ID: Rep_148_c_5_38
Type: CAZyme
Location: 50892 - 53336 (-)
Type: CAZyme
Location: 50892 - 53336 (-)
Gene ID: Rep_148_c_5_39
Type:
Location: 53354 - 54205 (-)
Type:
Location: 53354 - 54205 (-)
Gene ID: Rep_148_c_5_40
Type: CAZyme
Location: 54240 - 57269 (-)
Type: CAZyme
Location: 54240 - 57269 (-)
Gene ID: Rep_148_c_5_41
Type: pfam
Location: 57295 - 58326 (-)
Type: pfam
Location: 57295 - 58326 (-)
Gene ID: Rep_148_c_5_42
Type: TC
Location: 58363 - 60099 (-)
Type: TC
Location: 58363 - 60099 (-)
Gene ID: Rep_148_c_5_43
Type: TC
Location: 60125 - 63322 (-)
Type: TC
Location: 60125 - 63322 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella colorans
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.