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Cluster: Rep_148_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_148_c_37 Rep_148_c_37_4 3321 4643 - 2.A.2.6.2
pfam Rep_148_c_37 Rep_148_c_37_5 4717 5109 - 23S_rRNA_IVP
TF Rep_148_c_37 Rep_148_c_37_6 5195 6220 - LacI
TC Rep_148_c_37 Rep_148_c_37_7 6565 9567 + 1.B.14.6.1
TC Rep_148_c_37 Rep_148_c_37_8 9582 11201 + 8.A.46.1.1
pfam Rep_148_c_37 Rep_148_c_37_9 11229 12818 + SusE | SusF_SusE
CAZyme Rep_148_c_37 Rep_148_c_37_10 12929 14695 + GH13_6
NULL(UNKNOWN) Rep_148_c_37 Rep_148_c_37_11 15034 15144 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_148_c_37 Rep_148_c_37_12 15218 16330 - HlyD_3 | Biotin_lipoyl_2 | HlyD_D23
TC Rep_148_c_37 Rep_148_c_37_13 16431 17675 - 3.A.1.122.1
TC Rep_148_c_37 Rep_148_c_37_14 17716 18975 - 3.A.1.122.2
TC Rep_148_c_37 Rep_148_c_37_15 18985 19704 - 3.A.1.122.14
pfam Rep_148_c_37 Rep_148_c_37_16 19752 20702 - Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8
TC Rep_148_c_37 Rep_148_c_37_17 20719 22485 - 3.A.1.135.5
pfam Rep_148_c_37 Rep_148_c_37_18 22579 23463 - NAD_kinase | NAD_kinase_C
TC Rep_148_c_37 Rep_148_c_37_19 23764 24417 + 9.B.20.1.3
Gene ID: Rep_148_c_37_4
Type: TC
Location: 3321 - 4643 (-)
Gene ID: Rep_148_c_37_5
Type: pfam
Location: 4717 - 5109 (-)
Gene ID: Rep_148_c_37_6
Type: TF
Location: 5195 - 6220 (-)
Gene ID: Rep_148_c_37_7
Type: TC
Location: 6565 - 9567 (+)
Gene ID: Rep_148_c_37_8
Type: TC
Location: 9582 - 11201 (+)
Gene ID: Rep_148_c_37_9
Type: pfam
Location: 11229 - 12818 (+)
Gene ID: Rep_148_c_37_10
Type: CAZyme
Location: 12929 - 14695 (+)
Gene ID: Rep_148_c_37_11
Type:
Location: 15034 - 15144 (+)
Gene ID: Rep_148_c_37_12
Type: pfam
Location: 15218 - 16330 (-)
Gene ID: Rep_148_c_37_13
Type: TC
Location: 16431 - 17675 (-)
Gene ID: Rep_148_c_37_14
Type: TC
Location: 17716 - 18975 (-)
Gene ID: Rep_148_c_37_15
Type: TC
Location: 18985 - 19704 (-)
Gene ID: Rep_148_c_37_16
Type: pfam
Location: 19752 - 20702 (-)
Gene ID: Rep_148_c_37_17
Type: TC
Location: 20719 - 22485 (-)
Gene ID: Rep_148_c_37_18
Type: pfam
Location: 22579 - 23463 (-)
Gene ID: Rep_148_c_37_19
Type: TC
Location: 23764 - 24417 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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