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Cluster: Rep_147_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_147_c_376 Rep_147_c_376_1 230 1543 + 2.A.1.7.8
pfam Rep_147_c_376 Rep_147_c_376_2 1790 3805 + Transketolase_N | Transket_pyr | Transketolase_C | Transketolase_C_1
pfam Rep_147_c_376 Rep_147_c_376_3 3865 4308 + LacAB_rpiB
TC Rep_147_c_376 Rep_147_c_376_4 4525 6363 - 3.A.18.1.1
TC Rep_147_c_376 Rep_147_c_376_5 6401 7624 - 1.B.42.1.13
pfam Rep_147_c_376 Rep_147_c_376_6 7640 8767 - TGT
STP Rep_147_c_376 Rep_147_c_376_7 8770 11202 - AAA
TC Rep_147_c_376 Rep_147_c_376_8 11394 12500 - 9.B.146.1.4
STP Rep_147_c_376 Rep_147_c_376_9 12575 14389 - Aminotran_1_2
pfam Rep_147_c_376 Rep_147_c_376_10 14415 15212 - LicD
CAZyme Rep_147_c_376 Rep_147_c_376_11 15199 16002 - GT2
Gene ID: Rep_147_c_376_1
Type: TC
Location: 230 - 1543 (+)
Gene ID: Rep_147_c_376_2
Type: pfam
Location: 1790 - 3805 (+)
Gene ID: Rep_147_c_376_3
Type: pfam
Location: 3865 - 4308 (+)
Gene ID: Rep_147_c_376_4
Type: TC
Location: 4525 - 6363 (-)
Gene ID: Rep_147_c_376_5
Type: TC
Location: 6401 - 7624 (-)
Gene ID: Rep_147_c_376_6
Type: pfam
Location: 7640 - 8767 (-)
Gene ID: Rep_147_c_376_7
Type: STP
Location: 8770 - 11202 (-)
Gene ID: Rep_147_c_376_8
Type: TC
Location: 11394 - 12500 (-)
Gene ID: Rep_147_c_376_9
Type: STP
Location: 12575 - 14389 (-)
Gene ID: Rep_147_c_376_10
Type: pfam
Location: 14415 - 15212 (-)
Gene ID: Rep_147_c_376_11
Type: CAZyme
Location: 15199 - 16002 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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