Cluster: Rep_144_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_144
- CGC Family ID: CGCFAM_00013
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_144_c_8 | Rep_144_c_8_8 | 8250 | 9521 | + | 9.B.146.1.3 |
| pfam | Rep_144_c_8 | Rep_144_c_8_9 | 9597 | 10928 | + | Mur_ligase_C | Mur_ligase_M | MurD_N | MurD-like_N |
| TC | Rep_144_c_8 | Rep_144_c_8_10 | 10986 | 12257 | + | 2.A.103.1.2 |
| NULL(UNKNOWN) | Rep_144_c_8 | Rep_144_c_8_11 | 12922 | 13101 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_144_c_8 | Rep_144_c_8_12 | 13203 | 14309 | + | GT28 |
Gene ID: Rep_144_c_8_8
Type: TC
Location: 8250 - 9521 (+)
Type: TC
Location: 8250 - 9521 (+)
Gene ID: Rep_144_c_8_9
Type: pfam
Location: 9597 - 10928 (+)
Type: pfam
Location: 9597 - 10928 (+)
Gene ID: Rep_144_c_8_10
Type: TC
Location: 10986 - 12257 (+)
Type: TC
Location: 10986 - 12257 (+)
Gene ID: Rep_144_c_8_11
Type:
Location: 12922 - 13101 (-)
Type:
Location: 12922 - 13101 (-)
Gene ID: Rep_144_c_8_12
Type: CAZyme
Location: 13203 - 14309 (+)
Type: CAZyme
Location: 13203 - 14309 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella nigrescens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.