Cluster: Rep_144_CGC19
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_144
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_144_c_21 | Rep_144_c_21_16 | 21170 | 22309 | - | GT19 |
| pfam | Rep_144_c_21 | Rep_144_c_21_17 | 22361 | 23131 | - | SurE |
| TC | Rep_144_c_21 | Rep_144_c_21_18 | 23242 | 24009 | + | 8.A.3.2.3 |
| pfam | Rep_144_c_21 | Rep_144_c_21_19 | 24051 | 24959 | + | ParBc | HTH_ParB | ParB_dimer |
| pfam | Rep_144_c_21 | Rep_144_c_21_20 | 24983 | 25756 | + | DUF5683 |
| CAZyme | Rep_144_c_21 | Rep_144_c_21_21 | 25797 | 26918 | + | GH23 |
Gene ID: Rep_144_c_21_16
Type: CAZyme
Location: 21170 - 22309 (-)
Type: CAZyme
Location: 21170 - 22309 (-)
Gene ID: Rep_144_c_21_17
Type: pfam
Location: 22361 - 23131 (-)
Type: pfam
Location: 22361 - 23131 (-)
Gene ID: Rep_144_c_21_18
Type: TC
Location: 23242 - 24009 (+)
Type: TC
Location: 23242 - 24009 (+)
Gene ID: Rep_144_c_21_19
Type: pfam
Location: 24051 - 24959 (+)
Type: pfam
Location: 24051 - 24959 (+)
Gene ID: Rep_144_c_21_20
Type: pfam
Location: 24983 - 25756 (+)
Type: pfam
Location: 24983 - 25756 (+)
Gene ID: Rep_144_c_21_21
Type: CAZyme
Location: 25797 - 26918 (+)
Type: CAZyme
Location: 25797 - 26918 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Prevotella
Species
Prevotella nigrescens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.