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Cluster: Rep_1373_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1373_c_8 Rep_1373_c_8_5 8741 9400 + 9.B.18.1.3
NULL(UNKNOWN) Rep_1373_c_8 Rep_1373_c_8_6 9494 10642 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1373_c_8 Rep_1373_c_8_7 10627 11379 + GT2
pfam Rep_1373_c_8 Rep_1373_c_8_8 11429 12721 + UDPG_MGDP_dh | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
pfam Rep_1373_c_8 Rep_1373_c_8_9 12767 14080 + UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_1373_c_8 Rep_1373_c_8_10 14120 15247 + GT4
CAZyme Rep_1373_c_8 Rep_1373_c_8_11 15261 16466 + GT4
TC Rep_1373_c_8 Rep_1373_c_8_12 16467 18011 + 2.A.66.4.2
Gene ID: Rep_1373_c_8_5
Type: TC
Location: 8741 - 9400 (+)
Gene ID: Rep_1373_c_8_6
Type:
Location: 9494 - 10642 (+)
Gene ID: Rep_1373_c_8_7
Type: CAZyme
Location: 10627 - 11379 (+)
Gene ID: Rep_1373_c_8_8
Type: pfam
Location: 11429 - 12721 (+)
Gene ID: Rep_1373_c_8_9
Type: pfam
Location: 12767 - 14080 (+)
Gene ID: Rep_1373_c_8_10
Type: CAZyme
Location: 14120 - 15247 (+)
Gene ID: Rep_1373_c_8_11
Type: CAZyme
Location: 15261 - 16466 (+)
Gene ID: Rep_1373_c_8_12
Type: TC
Location: 16467 - 18011 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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