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Cluster: Rep_135_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_135_c_265 Rep_135_c_265_3 1412 2854 + GH125
pfam Rep_135_c_265 Rep_135_c_265_4 3099 3674 + DUF4199
CAZyme Rep_135_c_265 Rep_135_c_265_5 3680 4633 + GT2
pfam Rep_135_c_265 Rep_135_c_265_6 4636 5133 + DUF6452
pfam Rep_135_c_265 Rep_135_c_265_7 5093 5833 + DUF6048
TC Rep_135_c_265 Rep_135_c_265_8 5830 6402 + 2.A.107.1.2
pfam Rep_135_c_265 Rep_135_c_265_9 6399 7436 + ApbE
TF Rep_135_c_265 Rep_135_c_265_10 7444 8136 + MarR
TC Rep_135_c_265 Rep_135_c_265_11 8286 9386 + 9.B.146.1.4
Gene ID: Rep_135_c_265_3
Type: CAZyme
Location: 1412 - 2854 (+)
Gene ID: Rep_135_c_265_4
Type: pfam
Location: 3099 - 3674 (+)
Gene ID: Rep_135_c_265_5
Type: CAZyme
Location: 3680 - 4633 (+)
Gene ID: Rep_135_c_265_6
Type: pfam
Location: 4636 - 5133 (+)
Gene ID: Rep_135_c_265_7
Type: pfam
Location: 5093 - 5833 (+)
Gene ID: Rep_135_c_265_8
Type: TC
Location: 5830 - 6402 (+)
Gene ID: Rep_135_c_265_9
Type: pfam
Location: 6399 - 7436 (+)
Gene ID: Rep_135_c_265_10
Type: TF
Location: 7444 - 8136 (+)
Gene ID: Rep_135_c_265_11
Type: TC
Location: 8286 - 9386 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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