dbCAN Logo

Cluster: Rep_1355_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1355_c_12 Rep_1355_c_12_1 212 934 + GT2
TC Rep_1355_c_12 Rep_1355_c_12_2 927 1187 + 2.A.123.4.1
CAZyme Rep_1355_c_12 Rep_1355_c_12_3 1189 2787 + GT83
pfam Rep_1355_c_12 Rep_1355_c_12_4 2787 3848 + 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd
pfam Rep_1355_c_12 Rep_1355_c_12_5 3850 5172 + UDPG_MGDP_dh | NAD_Gly3P_dh_N | 3HCDH_N | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
CAZyme Rep_1355_c_12 Rep_1355_c_12_6 5248 6690 - GH1
TC Rep_1355_c_12 Rep_1355_c_12_7 6749 8188 - 4.A.1.2.3
pfam Rep_1355_c_12 Rep_1355_c_12_8 8306 9142 - PRD | PRD | CAT_RBD
TC Rep_1355_c_12 Rep_1355_c_12_9 9373 10062 - 9.B.120.1.2
TC Rep_1355_c_12 Rep_1355_c_12_10 10123 11493 - 2.A.35.2.1
Gene ID: Rep_1355_c_12_1
Type: CAZyme
Location: 212 - 934 (+)
Gene ID: Rep_1355_c_12_2
Type: TC
Location: 927 - 1187 (+)
Gene ID: Rep_1355_c_12_3
Type: CAZyme
Location: 1189 - 2787 (+)
Gene ID: Rep_1355_c_12_4
Type: pfam
Location: 2787 - 3848 (+)
Gene ID: Rep_1355_c_12_5
Type: pfam
Location: 3850 - 5172 (+)
Gene ID: Rep_1355_c_12_6
Type: CAZyme
Location: 5248 - 6690 (-)
Gene ID: Rep_1355_c_12_7
Type: TC
Location: 6749 - 8188 (-)
Gene ID: Rep_1355_c_12_8
Type: pfam
Location: 8306 - 9142 (-)
Gene ID: Rep_1355_c_12_9
Type: TC
Location: 9373 - 10062 (-)
Gene ID: Rep_1355_c_12_10
Type: TC
Location: 10123 - 11493 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List