Cluster: Rep_1353_CGC8
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1353_c_2 | Rep_1353_c_2_71 | 87518 | 90433 | - | PL8_2 |
| TC | Rep_1353_c_2 | Rep_1353_c_2_72 | 90506 | 92065 | - | 3.A.1.1.10 |
| pfam | Rep_1353_c_2 | Rep_1353_c_2_73 | 92088 | 92849 | - | adh_short | KR | adh_short_C2 |
| pfam | Rep_1353_c_2 | Rep_1353_c_2_74 | 92863 | 93699 | - | KduI |
| TC | Rep_1353_c_2 | Rep_1353_c_2_75 | 93753 | 94634 | - | 3.A.1.1.10 |
| TC | Rep_1353_c_2 | Rep_1353_c_2_76 | 94673 | 95650 | - | 3.A.1.1.10 |
| TC | Rep_1353_c_2 | Rep_1353_c_2_77 | 95793 | 97241 | - | 3.A.1.1.10 |
| sulfatase | Rep_1353_c_2 | Rep_1353_c_2_78 | 97345 | 98718 | - | S1_27;S1_N.C. |
| pfam | Rep_1353_c_2 | Rep_1353_c_2_79 | 98953 | 100851 | + | Autotransporter |
| CAZyme | Rep_1353_c_2 | Rep_1353_c_2_80 | 100860 | 103118 | + | PL8 |
| pfam | Rep_1353_c_2 | Rep_1353_c_2_81 | 103120 | 103740 | + | LUD_dom |
| pfam | Rep_1353_c_2 | Rep_1353_c_2_82 | 103740 | 104240 | + | LUD_dom |
| CAZyme | Rep_1353_c_2 | Rep_1353_c_2_83 | 104279 | 105469 | - | GH88 |
| TF | Rep_1353_c_2 | Rep_1353_c_2_84 | 105610 | 107601 | - | HTH_AraC |
| CAZyme | Rep_1353_c_2 | Rep_1353_c_2_85 | 107632 | 109452 | - | PL8 |
Gene ID: Rep_1353_c_2_71
Type: CAZyme
Location: 87518 - 90433 (-)
Type: CAZyme
Location: 87518 - 90433 (-)
Gene ID: Rep_1353_c_2_72
Type: TC
Location: 90506 - 92065 (-)
Type: TC
Location: 90506 - 92065 (-)
Gene ID: Rep_1353_c_2_73
Type: pfam
Location: 92088 - 92849 (-)
Type: pfam
Location: 92088 - 92849 (-)
Gene ID: Rep_1353_c_2_74
Type: pfam
Location: 92863 - 93699 (-)
Type: pfam
Location: 92863 - 93699 (-)
Gene ID: Rep_1353_c_2_75
Type: TC
Location: 93753 - 94634 (-)
Type: TC
Location: 93753 - 94634 (-)
Gene ID: Rep_1353_c_2_76
Type: TC
Location: 94673 - 95650 (-)
Type: TC
Location: 94673 - 95650 (-)
Gene ID: Rep_1353_c_2_77
Type: TC
Location: 95793 - 97241 (-)
Type: TC
Location: 95793 - 97241 (-)
Gene ID: Rep_1353_c_2_78
Type: sulfatase
Location: 97345 - 98718 (-)
Type: sulfatase
Location: 97345 - 98718 (-)
Gene ID: Rep_1353_c_2_79
Type: pfam
Location: 98953 - 100851 (+)
Type: pfam
Location: 98953 - 100851 (+)
Gene ID: Rep_1353_c_2_80
Type: CAZyme
Location: 100860 - 103118 (+)
Type: CAZyme
Location: 100860 - 103118 (+)
Gene ID: Rep_1353_c_2_81
Type: pfam
Location: 103120 - 103740 (+)
Type: pfam
Location: 103120 - 103740 (+)
Gene ID: Rep_1353_c_2_82
Type: pfam
Location: 103740 - 104240 (+)
Type: pfam
Location: 103740 - 104240 (+)
Gene ID: Rep_1353_c_2_83
Type: CAZyme
Location: 104279 - 105469 (-)
Type: CAZyme
Location: 104279 - 105469 (-)
Gene ID: Rep_1353_c_2_84
Type: TF
Location: 105610 - 107601 (-)
Type: TF
Location: 105610 - 107601 (-)
Gene ID: Rep_1353_c_2_85
Type: CAZyme
Location: 107632 - 109452 (-)
Type: CAZyme
Location: 107632 - 109452 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Cetobacterium_A
Species
Cetobacterium_A sp905216205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.