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Cluster: Rep_1353_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_2 Rep_1353_c_2_52 68318 69829 + 3.A.1.5.42
peptidase Rep_1353_c_2 Rep_1353_c_2_53 69869 71272 - M20.UPA
TC Rep_1353_c_2 Rep_1353_c_2_54 71274 71582 - 4.A.3.2.6
TC Rep_1353_c_2 Rep_1353_c_2_55 71582 72883 - 4.A.3.2.8
peptidase Rep_1353_c_2 Rep_1353_c_2_56 72884 73840 - T02.UPW
TC Rep_1353_c_2 Rep_1353_c_2_57 73845 74165 - 4.A.3.2.1
pfam Rep_1353_c_2 Rep_1353_c_2_58 74407 75285 + Rep3_C
CAZyme Rep_1353_c_2 Rep_1353_c_2_59 75324 76592 - GH109
TC Rep_1353_c_2 Rep_1353_c_2_60 76604 77440 - 3.A.1.1.18
TC Rep_1353_c_2 Rep_1353_c_2_61 77406 78392 - 3.A.1.1.11
STP Rep_1353_c_2 Rep_1353_c_2_62 78409 79692 - SBP_bac_1
CAZyme Rep_1353_c_2 Rep_1353_c_2_63 79705 81462 - GH35
Gene ID: Rep_1353_c_2_52
Type: TC
Location: 68318 - 69829 (+)
Gene ID: Rep_1353_c_2_53
Type: peptidase
Location: 69869 - 71272 (-)
Gene ID: Rep_1353_c_2_54
Type: TC
Location: 71274 - 71582 (-)
Gene ID: Rep_1353_c_2_55
Type: TC
Location: 71582 - 72883 (-)
Gene ID: Rep_1353_c_2_56
Type: peptidase
Location: 72884 - 73840 (-)
Gene ID: Rep_1353_c_2_57
Type: TC
Location: 73845 - 74165 (-)
Gene ID: Rep_1353_c_2_58
Type: pfam
Location: 74407 - 75285 (+)
Gene ID: Rep_1353_c_2_59
Type: CAZyme
Location: 75324 - 76592 (-)
Gene ID: Rep_1353_c_2_60
Type: TC
Location: 76604 - 77440 (-)
Gene ID: Rep_1353_c_2_61
Type: TC
Location: 77406 - 78392 (-)
Gene ID: Rep_1353_c_2_62
Type: STP
Location: 78409 - 79692 (-)
Gene ID: Rep_1353_c_2_63
Type: CAZyme
Location: 79705 - 81462 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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