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Cluster: Rep_1353_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_1 Rep_1353_c_1_83 96021 96359 - 4.A.3.2.2
CAZyme Rep_1353_c_1 Rep_1353_c_1_84 96386 97471 - GH170
pfam Rep_1353_c_1 Rep_1353_c_1_85 97635 98780 - Rep3_C
TC Rep_1353_c_1 Rep_1353_c_1_86 99101 99406 + 4.A.3.2.6
NULL(UNKNOWN) Rep_1353_c_1 Rep_1353_c_1_87 99459 100547 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1353_c_1 Rep_1353_c_1_88 100656 101990 + 4.A.3.2.3
pfam Rep_1353_c_1 Rep_1353_c_1_89 102061 104109 - BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | HHH_2 | HHH_5 | Nlig-Ia
pfam Rep_1353_c_1 Rep_1353_c_1_90 104224 105300 + Fe-ADH | Fe-ADH_2
TC Rep_1353_c_1 Rep_1353_c_1_91 105363 106466 - 1.B.32.1.1
Gene ID: Rep_1353_c_1_83
Type: TC
Location: 96021 - 96359 (-)
Gene ID: Rep_1353_c_1_84
Type: CAZyme
Location: 96386 - 97471 (-)
Gene ID: Rep_1353_c_1_85
Type: pfam
Location: 97635 - 98780 (-)
Gene ID: Rep_1353_c_1_86
Type: TC
Location: 99101 - 99406 (+)
Gene ID: Rep_1353_c_1_87
Type:
Location: 99459 - 100547 (+)
Gene ID: Rep_1353_c_1_88
Type: TC
Location: 100656 - 101990 (+)
Gene ID: Rep_1353_c_1_89
Type: pfam
Location: 102061 - 104109 (-)
Gene ID: Rep_1353_c_1_90
Type: pfam
Location: 104224 - 105300 (+)
Gene ID: Rep_1353_c_1_91
Type: TC
Location: 105363 - 106466 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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