Cluster: Rep_1353_CGC5
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate: alpha-glucan
- Genome ID: Rep_1353
- CGC Family ID: CGCFAM_00004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1353_c_1 | Rep_1353_c_1_58 | 66215 | 67555 | - | 9.A.5.1.1 |
| STP | Rep_1353_c_1 | Rep_1353_c_1_59 | 67803 | 68996 | - | Aminotran_1_2 |
| TC | Rep_1353_c_1 | Rep_1353_c_1_60 | 69132 | 70484 | - | 1.A.26.1.2 |
| TF | Rep_1353_c_1 | Rep_1353_c_1_61 | 70727 | 70927 | - | CSD |
| CAZyme | Rep_1353_c_1 | Rep_1353_c_1_62 | 71107 | 71736 | - | CE4 |
| CAZyme | Rep_1353_c_1 | Rep_1353_c_1_63 | 71962 | 73842 | + | GH13_9 |
| pfam | Rep_1353_c_1 | Rep_1353_c_1_64 | 73845 | 74963 | + | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_1353_c_1 | Rep_1353_c_1_65 | 74963 | 76054 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_1353_c_1 | Rep_1353_c_1_66 | 76076 | 77518 | + | GT5 |
| CAZyme | Rep_1353_c_1 | Rep_1353_c_1_67 | 77515 | 79947 | + | GT35 |
| CAZyme | Rep_1353_c_1 | Rep_1353_c_1_68 | 79940 | 81877 | + | GH13_39 |
| TC | Rep_1353_c_1 | Rep_1353_c_1_69 | 82277 | 82942 | + | 3.A.1.3.15 |
| TC | Rep_1353_c_1 | Rep_1353_c_1_70 | 82939 | 83667 | + | 3.A.1.3.15 |
| TC | Rep_1353_c_1 | Rep_1353_c_1_71 | 83702 | 84421 | + | 3.A.1.3.27 |
Gene ID: Rep_1353_c_1_58
Type: TC
Location: 66215 - 67555 (-)
Type: TC
Location: 66215 - 67555 (-)
Gene ID: Rep_1353_c_1_59
Type: STP
Location: 67803 - 68996 (-)
Type: STP
Location: 67803 - 68996 (-)
Gene ID: Rep_1353_c_1_60
Type: TC
Location: 69132 - 70484 (-)
Type: TC
Location: 69132 - 70484 (-)
Gene ID: Rep_1353_c_1_61
Type: TF
Location: 70727 - 70927 (-)
Type: TF
Location: 70727 - 70927 (-)
Gene ID: Rep_1353_c_1_62
Type: CAZyme
Location: 71107 - 71736 (-)
Type: CAZyme
Location: 71107 - 71736 (-)
Gene ID: Rep_1353_c_1_63
Type: CAZyme
Location: 71962 - 73842 (+)
Type: CAZyme
Location: 71962 - 73842 (+)
Gene ID: Rep_1353_c_1_64
Type: pfam
Location: 73845 - 74963 (+)
Type: pfam
Location: 73845 - 74963 (+)
Gene ID: Rep_1353_c_1_65
Type: pfam
Location: 74963 - 76054 (+)
Type: pfam
Location: 74963 - 76054 (+)
Gene ID: Rep_1353_c_1_66
Type: CAZyme
Location: 76076 - 77518 (+)
Type: CAZyme
Location: 76076 - 77518 (+)
Gene ID: Rep_1353_c_1_67
Type: CAZyme
Location: 77515 - 79947 (+)
Type: CAZyme
Location: 77515 - 79947 (+)
Gene ID: Rep_1353_c_1_68
Type: CAZyme
Location: 79940 - 81877 (+)
Type: CAZyme
Location: 79940 - 81877 (+)
Gene ID: Rep_1353_c_1_69
Type: TC
Location: 82277 - 82942 (+)
Type: TC
Location: 82277 - 82942 (+)
Gene ID: Rep_1353_c_1_70
Type: TC
Location: 82939 - 83667 (+)
Type: TC
Location: 82939 - 83667 (+)
Gene ID: Rep_1353_c_1_71
Type: TC
Location: 83702 - 84421 (+)
Type: TC
Location: 83702 - 84421 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Cetobacterium_A
Species
Cetobacterium_A sp905216205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.