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Cluster: Rep_1353_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_1 Rep_1353_c_1_19 25117 26538 - 2.A.22.5.3
TC Rep_1353_c_1 Rep_1353_c_1_20 26959 28458 + 2.A.118.1.8
TC Rep_1353_c_1 Rep_1353_c_1_21 28720 30258 + 2.A.35.2.1
pfam Rep_1353_c_1 Rep_1353_c_1_22 30213 31628 + Lyase_1 | ASL_C2
pfam Rep_1353_c_1 Rep_1353_c_1_23 31666 32784 - Rep3_C
TC Rep_1353_c_1 Rep_1353_c_1_24 33030 33356 + 4.A.3.2.7
TC Rep_1353_c_1 Rep_1353_c_1_25 33372 34703 + 4.A.3.2.2
CAZyme Rep_1353_c_1 Rep_1353_c_1_26 34723 36072 + GH4
CAZyme Rep_1353_c_1 Rep_1353_c_1_27 36086 37516 + GH1
TC Rep_1353_c_1 Rep_1353_c_1_28 37517 37783 + 2.A.123.2.3
pfam Rep_1353_c_1 Rep_1353_c_1_29 37795 38874 - Rep3_C
TC Rep_1353_c_1 Rep_1353_c_1_30 39078 39383 + 4.A.3.2.6
TC Rep_1353_c_1 Rep_1353_c_1_31 39399 40769 + 4.A.3.2.2
TC Rep_1353_c_1 Rep_1353_c_1_32 40783 41088 + 4.A.3.2.7
CAZyme Rep_1353_c_1 Rep_1353_c_1_33 41105 42451 + GH4
Gene ID: Rep_1353_c_1_19
Type: TC
Location: 25117 - 26538 (-)
Gene ID: Rep_1353_c_1_20
Type: TC
Location: 26959 - 28458 (+)
Gene ID: Rep_1353_c_1_21
Type: TC
Location: 28720 - 30258 (+)
Gene ID: Rep_1353_c_1_22
Type: pfam
Location: 30213 - 31628 (+)
Gene ID: Rep_1353_c_1_23
Type: pfam
Location: 31666 - 32784 (-)
Gene ID: Rep_1353_c_1_24
Type: TC
Location: 33030 - 33356 (+)
Gene ID: Rep_1353_c_1_25
Type: TC
Location: 33372 - 34703 (+)
Gene ID: Rep_1353_c_1_26
Type: CAZyme
Location: 34723 - 36072 (+)
Gene ID: Rep_1353_c_1_27
Type: CAZyme
Location: 36086 - 37516 (+)
Gene ID: Rep_1353_c_1_28
Type: TC
Location: 37517 - 37783 (+)
Gene ID: Rep_1353_c_1_29
Type: pfam
Location: 37795 - 38874 (-)
Gene ID: Rep_1353_c_1_30
Type: TC
Location: 39078 - 39383 (+)
Gene ID: Rep_1353_c_1_31
Type: TC
Location: 39399 - 40769 (+)
Gene ID: Rep_1353_c_1_32
Type: TC
Location: 40783 - 41088 (+)
Gene ID: Rep_1353_c_1_33
Type: CAZyme
Location: 41105 - 42451 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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