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Cluster: Rep_1353_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_21 Rep_1353_c_21_21 19198 19872 + 3.A.1.122.14
TC Rep_1353_c_21 Rep_1353_c_21_22 19878 21098 + 3.A.1.122.2
pfam Rep_1353_c_21 Rep_1353_c_21_23 21268 24438 - Autotransporter
TC Rep_1353_c_21 Rep_1353_c_21_24 24453 26678 - 1.B.14.9.4
pfam Rep_1353_c_21 Rep_1353_c_21_25 27305 28165 - YhcG_C | DUF1016_N
pfam Rep_1353_c_21 Rep_1353_c_21_26 28203 29285 - PDDEXK_4
TC Rep_1353_c_21 Rep_1353_c_21_27 30438 31886 + 2.A.35.1.2
pfam Rep_1353_c_21 Rep_1353_c_21_28 32084 32947 - APH
TC Rep_1353_c_21 Rep_1353_c_21_29 32967 33275 - 4.A.3.2.3
CAZyme Rep_1353_c_21 Rep_1353_c_21_30 33287 34621 - GH4
pfam Rep_1353_c_21 Rep_1353_c_21_31 34634 35341 - YdjC
TC Rep_1353_c_21 Rep_1353_c_21_32 35359 36675 - 4.A.3.2.8
Gene ID: Rep_1353_c_21_21
Type: TC
Location: 19198 - 19872 (+)
Gene ID: Rep_1353_c_21_22
Type: TC
Location: 19878 - 21098 (+)
Gene ID: Rep_1353_c_21_23
Type: pfam
Location: 21268 - 24438 (-)
Gene ID: Rep_1353_c_21_24
Type: TC
Location: 24453 - 26678 (-)
Gene ID: Rep_1353_c_21_25
Type: pfam
Location: 27305 - 28165 (-)
Gene ID: Rep_1353_c_21_26
Type: pfam
Location: 28203 - 29285 (-)
Gene ID: Rep_1353_c_21_27
Type: TC
Location: 30438 - 31886 (+)
Gene ID: Rep_1353_c_21_28
Type: pfam
Location: 32084 - 32947 (-)
Gene ID: Rep_1353_c_21_29
Type: TC
Location: 32967 - 33275 (-)
Gene ID: Rep_1353_c_21_30
Type: CAZyme
Location: 33287 - 34621 (-)
Gene ID: Rep_1353_c_21_31
Type: pfam
Location: 34634 - 35341 (-)
Gene ID: Rep_1353_c_21_32
Type: TC
Location: 35359 - 36675 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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