Cluster: Rep_1353_CGC2
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1353
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1353_c_0 | Rep_1353_c_0_193 | 181208 | 183589 | - | GT35 |
| NULL(UNKNOWN) | Rep_1353_c_0 | Rep_1353_c_0_194 | 183609 | 184439 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_1353_c_0 | Rep_1353_c_0_195 | 184458 | 185231 | - | TrmB |
| TC | Rep_1353_c_0 | Rep_1353_c_0_196 | 185241 | 186098 | - | 3.A.1.1.6 |
| TC | Rep_1353_c_0 | Rep_1353_c_0_197 | 186095 | 186985 | - | 3.A.1.1.7 |
| TC | Rep_1353_c_0 | Rep_1353_c_0_198 | 187043 | 188281 | - | 3.A.1.1.16 |
| TC | Rep_1353_c_0 | Rep_1353_c_0_199 | 188518 | 189972 | + | 1.B.3.1.2 |
| CAZyme | Rep_1353_c_0 | Rep_1353_c_0_200 | 190062 | 191561 | + | GH77 |
| NULL(UNKNOWN) | Rep_1353_c_0 | Rep_1353_c_0_201 | 191582 | 192088 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1353_c_0 | Rep_1353_c_0_202 | 192193 | 192804 | + | 3.A.1.139.2 |
| TC | Rep_1353_c_0 | Rep_1353_c_0_203 | 192804 | 193586 | + | 3.A.1.139.3 |
| TC | Rep_1353_c_0 | Rep_1353_c_0_204 | 193596 | 194900 | + | 2.A.3.2.7 |
Gene ID: Rep_1353_c_0_193
Type: CAZyme
Location: 181208 - 183589 (-)
Type: CAZyme
Location: 181208 - 183589 (-)
Gene ID: Rep_1353_c_0_194
Type:
Location: 183609 - 184439 (-)
Type:
Location: 183609 - 184439 (-)
Gene ID: Rep_1353_c_0_195
Type: TF
Location: 184458 - 185231 (-)
Type: TF
Location: 184458 - 185231 (-)
Gene ID: Rep_1353_c_0_196
Type: TC
Location: 185241 - 186098 (-)
Type: TC
Location: 185241 - 186098 (-)
Gene ID: Rep_1353_c_0_197
Type: TC
Location: 186095 - 186985 (-)
Type: TC
Location: 186095 - 186985 (-)
Gene ID: Rep_1353_c_0_198
Type: TC
Location: 187043 - 188281 (-)
Type: TC
Location: 187043 - 188281 (-)
Gene ID: Rep_1353_c_0_199
Type: TC
Location: 188518 - 189972 (+)
Type: TC
Location: 188518 - 189972 (+)
Gene ID: Rep_1353_c_0_200
Type: CAZyme
Location: 190062 - 191561 (+)
Type: CAZyme
Location: 190062 - 191561 (+)
Gene ID: Rep_1353_c_0_201
Type:
Location: 191582 - 192088 (-)
Type:
Location: 191582 - 192088 (-)
Gene ID: Rep_1353_c_0_202
Type: TC
Location: 192193 - 192804 (+)
Type: TC
Location: 192193 - 192804 (+)
Gene ID: Rep_1353_c_0_203
Type: TC
Location: 192804 - 193586 (+)
Type: TC
Location: 192804 - 193586 (+)
Gene ID: Rep_1353_c_0_204
Type: TC
Location: 193596 - 194900 (+)
Type: TC
Location: 193596 - 194900 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Fusobacteriota
Class
Fusobacteriia
Order
Fusobacteriales
Family
Fusobacteriaceae
Genus
Cetobacterium_A
Species
Cetobacterium_A sp905216205
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.