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Cluster: Rep_1353_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1353_c_9 Rep_1353_c_9_40 40227 41576 - 2.A.40.2.1
TC Rep_1353_c_9 Rep_1353_c_9_41 42233 43132 + 8.A.5.1.7
TF Rep_1353_c_9 Rep_1353_c_9_42 43187 44164 - LacI
CAZyme Rep_1353_c_9 Rep_1353_c_9_43 44363 47410 + GH2
pfam Rep_1353_c_9 Rep_1353_c_9_44 47421 47873 + DUF386
TC Rep_1353_c_9 Rep_1353_c_9_45 47889 49304 + 2.A.3.7.4
CAZyme Rep_1353_c_9 Rep_1353_c_9_46 49367 51625 + GH63
pfam Rep_1353_c_9 Rep_1353_c_9_47 51791 52066 - Se_S_carrier
pfam Rep_1353_c_9 Rep_1353_c_9_48 52066 52653 - TusA | DsrE
TC Rep_1353_c_9 Rep_1353_c_9_49 52820 54244 + 2.A.3.7.4
Gene ID: Rep_1353_c_9_40
Type: TC
Location: 40227 - 41576 (-)
Gene ID: Rep_1353_c_9_41
Type: TC
Location: 42233 - 43132 (+)
Gene ID: Rep_1353_c_9_42
Type: TF
Location: 43187 - 44164 (-)
Gene ID: Rep_1353_c_9_43
Type: CAZyme
Location: 44363 - 47410 (+)
Gene ID: Rep_1353_c_9_44
Type: pfam
Location: 47421 - 47873 (+)
Gene ID: Rep_1353_c_9_45
Type: TC
Location: 47889 - 49304 (+)
Gene ID: Rep_1353_c_9_46
Type: CAZyme
Location: 49367 - 51625 (+)
Gene ID: Rep_1353_c_9_47
Type: pfam
Location: 51791 - 52066 (-)
Gene ID: Rep_1353_c_9_48
Type: pfam
Location: 52066 - 52653 (-)
Gene ID: Rep_1353_c_9_49
Type: TC
Location: 52820 - 54244 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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